PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY32786.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 220aa    MW: 25035.3 Da    PI: 5.1117
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY32786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53e-221765149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                kr+e ks rqvtfskR++g++ KA+EL+vLC+aeva++i+s++ + +++
  GAY32786.1 17 KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
                7899**************************************9999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MEASKQKNKG LQKIEIKRVE RKSARQVTFS KRKKGLFNKA SELCVLCGAE VAIVIMSPHK  60
RAFTFGHPNP DDVLDRFLTG VDAKSSLAAT TVEDDEKLER LKQEYVELLN RLKEEEKKRD  120
EIAKKRGNDG ANGVFWWDQY SIDDMERDEL ELYLKSLEKL KTSVKSKVDE LAAASQASNN  180
FVNQFNIDNN VPIDFGSEFD DLCCLLEGTN EDGILRNLDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27M-type_MADS family protein