PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY33012.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 618aa    MW: 68116.2 Da    PI: 6.2416
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY33012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.71e-1202526171373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+s+++ +  ++l+++     +  g+p+qRl ay++eAL ar  +s+s++y+al+++e +   s++ l+++++++e++P+lkf++++aN
  GAY33012.1 252 LKQLLIACAKALSENNINDFDKLIEK-----ARGGEPIQRLGAYMVEALVARKEKSGSNIYRALRCREPE---SKDLLSYMHILYEICPYLKFGYMAAN 342
                 689********************997.....5679**********************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea ++e+++HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p s+  + + le++g+rLa + +++++ +efn+ +     d++l++L v
  GAY33012.1 343 GAIAEACKTEDCIHIIDFQIAQGTQWMTLLQALAAKPSGAPRVRITGIDDPVSKyaRGDGLEAVGRRLAAISQKFNILVEFNP-IPVFAPDVTLDMLGV 440
                 ***************************************************999999**************************.6888999******** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ lqlh+++desv+l+++rd +L+++ksl+Pkvv++veqe+++n++ Fl rf+e+l+yy a+f+s+++++pr+++eri+vE+++l+r+iv
  GAY33012.1 441 RPGEALAVNFPLQLHHTPDESVDLNNPRDGLLRMIKSLNPKVVTLVEQESNTNTAAFLPRFVETLNYYLAMFESIDVTMPRDQKERINVEQHCLARDIV 539
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW.kdrpLvsvSaW 373
                 nv+aceg+er+erhe l+kW++r+++aGF++ pls ++++ ++ llr ++ + y++ e +g+++lg  k   Lvs+SaW
  GAY33012.1 540 NVIACEGRERVERHELLGKWKSRFTMAGFRQCPLSPYVNSVIRNLLRFYS-EHYTLVEMDGAMLLGAgKIGLLVSASAW 617
                 **********************************************9999.66***********9852567899***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MDSRQIIGCG VTSAGISYSS SCPTVPSIPN RLFGPLKFDV GNSPNSPFSN QFECDTITSL  60
SDSQEQHSPS DNPSGLSPSC DSSLESNSYF HQLSPAVDSL ILFSGGTSYL QNANSSQKIK  120
HVLQELETVL MGPDEEEAAK PNTSYGGSSK PQAPGHRPRS WSQEHHGSHV IQPQPSFISR  180
YRQSAEEPKY GVDASFIFTG IDNINGVGIQ CSFVPQPSFI SRYRQSAEGA QIENSQMAIG  240
ESSLQGFPSG NLKQLLIACA KALSENNIND FDKLIEKARG GEPIQRLGAY MVEALVARKE  300
KSGSNIYRAL RCREPESKDL LSYMHILYEI CPYLKFGYMA ANGAIAEACK TEDCIHIIDF  360
QIAQGTQWMT LLQALAAKPS GAPRVRITGI DDPVSKYARG DGLEAVGRRL AAISQKFNIL  420
VEFNPIPVFA PDVTLDMLGV RPGEALAVNF PLQLHHTPDE SVDLNNPRDG LLRMIKSLNP  480
KVVTLVEQES NTNTAAFLPR FVETLNYYLA MFESIDVTMP RDQKERINVE QHCLARDIVN  540
VIACEGRERV ERHELLGKWK SRFTMAGFRQ CPLSPYVNSV IRNLLRFYSE HYTLVEMDGA  600
MLLGAGKIGL LVSASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-172GRAS family protein