PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY33318.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 29334.1 Da PI: 7.1652

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY33318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	89	141	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +LA++lgL+ rq+ vWFqNrRa++k GAY33318.1 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 4569************************************************9 PP
2	HD-ZIP_I/II	117.7	6.6e-38	87	179	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+k+rl+++q+++LE+sF+ee kL+p+rK++lareLglqprq+avWFqnrRAR+k+kqlE y++Lk++yda+++e+ +L++ev +L++ lke GAY33318.1 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLKE 179 69**************************************************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MDWSSTTGNL RTFVPVIPRP ETSFDLLYNY NYDQFPGMDQ MNKHMHAAAA AAAMAEKSSS 60 SIGLIPAAEL MEKNIHHYGS SSTSSQERKK RLTSDQLESL ERSFQEEIKL DPDRKMKLAR 120 ELGLQPRQIA VWFQNRRARW KSKQLELLYD SLKQEYDAVS REKLKLQEEV MKLKRMLKEQ 180 GTSTRNMMNK QVSTGITEVS GEETVESTSV ATINGSFSNK HHQISECNYL FNVDEEFNAA 240 AAPLPSPFWG LLPTSFQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	117	RKKRLTSDQLESLERSFQEEIKLDPDRKMK
2	136	144	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-50	HD-ZIP family protein