PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY33820.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LSD

Protein Properties

Length: 225aa MW: 23718.6 Da PI: 9.2911

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY33820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.8	3.5e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+t+ GAY33820.1 7 CSGCRSVLLYPRGATNVCCALCNTI 31 ***********************97 PP
2	zf-LSD1	49.2	8.7e-16	79	103	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV GAY33820.1 79 CGGCRTLLMYTRGATSVRCSCCHTV 103 ************************9 PP
3	zf-LSD1	45.2	1.5e-14	139	163	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+ V GAY33820.1 139 CGHCRTTLMYPHGAPSVKCAVCQYV 163 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MQSQLVCSGC RSVLLYPRGA TNVCCALCNT ITSVPIPGHL WTTLTYGGKA KSLGGGLSRV 60 YHQSLYNASA GMEMAQLICG GCRTLLMYTR GATSVRCSCC HTVNLAPALW PSRGGPRIVP 120 RGGPHTTSRA PNQFAHVICG HCRTTLMYPH GAPSVKCAVC QYVTNVNMAN ARVPLPANRP 180 NGTAIPGTLP STSMTQTVVV ENPMSVDESG KLVSNVVVGV STEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-72	LSD family protein