PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY33824.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LSD

Protein Properties

Length: 219aa MW: 24364.3 Da PI: 9.8832

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY33824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.3	1.5e-14	133	157	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+ V GAY33824.1 133 CGHCRTTLMYPHGAPSVKCAVCQYV 157 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MFVVHYVIQL HLSLFQDIYG QLSLTVAKPR VLVGVCQNGN GSANLWRLQD IAHVYTWGNK 60 CEMLLLSHSE SCTSALALKR WPPHSPKRWP PHNFKRKWMQ FMCLSLVSYQ RFSTFLSQIP 120 SRASPNQFAH VICGHCRTTL MYPHGAPSVK CAVCQYVTNV NMANARVPLP ANRPNGTAIP 180 GTLPSTSMTQ TVVVENPMSV DESGKLVSNV VVGVSTEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-41	LSD family protein