PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY34081.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 314aa    MW: 34465.8 Da    PI: 10.2682
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY34081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.86.9e-371052652135
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.sec...e 74 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                      +   +  ++   +
  GAY34081.1 105 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGVDQPSKAVEWLIKAAADSIAELPSLnstfpdtpkqlsdekrasegtdQ---QgFDSvelD 200
                 689*************************************************************87776555555444433332110...121112322 PP

         TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                  + +++ ++n+s++++ +++a+s++s++s+ s l+l++      r kar+rarer ++++ +k++
  GAY34081.1 201 GDPNNNYQQNQSQHRSLSKSACSSNSETSKGSGLSLSRselrVNRDKARERARERAAKEKDQKEN 265
                 222233333444447778888888889998888999887344455*********76666555544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
ESTPRSFNLL QRAQKYRSSQ TQACKLSRIG NGRLDSTKMS QKDQYPDDEE DGEQQQLQLI  60
KRASANDSGG ALGVNNTAAA AGCGGGNRLR GWHHSSRIIR VSRASGGKDR HSKVWTSKGL  120
RDRRVRLSVT TAIQFYDLQD RLGVDQPSKA VEWLIKAAAD SIAELPSLNS TFPDTPKQLS  180
DEKRASEGTD QQGFDSVELD GDPNNNYQQN QSQHRSLSKS ACSSNSETSK GSGLSLSRSE  240
LRVNRDKARE RARERAAKEK DQKENDSNGL FQLRTTRAIF VSATTSSSSF GANPIGKLKF  300
SPTSNANPTI QCNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.12e-47TCP family protein