PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY34165.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 718aa    MW: 79278.9 Da    PI: 6.0036
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY34165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.8e-2059114156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  GAY34165.1  59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                 789999***********************************************998 PP
2START227.53.8e-712444561206
                 HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
       START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                 ela +a++e++++a+a++p+W+  +  +n+de+l++f+++ +    ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+t+ev+s+g    
  GAY34165.1 244 ELAVAAMEEFLRMAQAGDPLWTDQV--LNEDEYLRTFPRGIGplgLRSEASRESTVVIMNHVNLVEILMDVN-QWSSVFCgivsRAMTIEVLSTGvagn 339
                 57899********************..************999******************************.******99999*************** PP

                 ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
       START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                   galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ p    + +++++pSg+li++++ng+skv+wvehv++++r++h+++++l
  GAY34165.1 340 ynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPSP----ISKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPL 434
                 **************************************************99....689999************************************* PP

                 HHHHHHHHHHHHHHHTXXXXXX CS
       START 185 vksglaegaktwvatlqrqcek 206
                 v+sgla+gak+wvatl+rqce+
  GAY34165.1 435 VNSGLAFGAKRWVATLDRQCER 456
                 ********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    
MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET TEMEAPSGDD QDPSQHPKRK  60
RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH  120
ENQILKAENE KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP  240
MIVELAVAAM EEFLRMAQAG DPLWTDQVLN EDEYLRTFPR GIGPLGLRSE ASRESTVVIM  300
NHVNLVEILM DVNQWSSVFC GIVSRAMTIE VLSTGVAGNY NGALQVMTAE FQVPSPLVPT  360
RENYFVRYCK QHSDGTWAVV DVSLDNLRPS PISKCRRRPS GCLIQELPNG YSKVIWVEHV  420
EVDDRSVHNI YKPLVNSGLA FGAKRWVATL DRQCERLASS MANNIPAGDL CVITSPEGRK  480
SMLKLAERMV TSFCTGVGAS TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP PGIVLSAATS  540
FWIPVPPRRI FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL LRVNSANSSQ  600
SNMLVLQESC TDSTGSYVIY APVDIVAMNM VLSGGDPDYV ALLPSGFAIL PDGPGLNGGR  660
ILEVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV MTDNASCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein