PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34308.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 551aa MW: 63323.6 Da PI: 5.9742

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.8e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+ +++++G +W+ +++ g+ R++k+c++rw +yl GAY34308.1 14 KGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 799***************99******99**********97 PP
2	Myb_DNA-binding	59.5	7.1e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eEde ++++++qlG++ W++Ia++++ +Rt++++k++w++ GAY34308.1 67 RGNFTQEEDETIIKLHQQLGNR-WSAIASRLP-RRTDNEIKNHWHT 110 89******************.*****.*********97 PP
3	Myb_DNA-binding	45	2.5e-14	303	350	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W+ +++ g+ R++k+c++rw +yl GAY34308.1 303 KGSWTPEEDWKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 350 799***************99******99**********97 PP
4	Myb_DNA-binding	61.3	2e-19	356	399	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eEde ++++++qlG++ W++Ia++++ gRt++++k++w++ GAY34308.1 356 RGNFTQEEDETIIKLHEQLGNR-WSAIASRLP-GRTDNEIKNHWHS 399 89******************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MVKAPGSEKP SLRKGSWAPE EDRKLIAYIR RYGIWNWSEM PKYAGLLRCG KSCRLRWMNY 60 LRPDIRRGNF TQEEDETIIK LHQQLGNRWS AIASRLPRRT DNEIKNHWHT RLSKKRLSKN 120 NQQQVLSVTE SLQDTQTAAI FEFDEANKQN QNPPEIFLAD PLPIVPNNSP KPPNVLTGCT 180 SPCPQLSTDN CSSSTSYVSA NYEEIYTIQI SEVNNYDHPS ENLDELHNFW EQPFTVDTLC 240 MTMAEGYGQE ATHTDPGFAV STPLWEYQQD YHFPTASSAS SYDADDDLWM VKAGGSEKPS 300 LRKGSWTPEE DWKLIAYIRR YGIWNWSEMP KYAGLLRCGK SCRLRWMNYL RPDIRRGNFT 360 QEEDETIIKL HEQLGNRWSA IASRLPGRTD NEIKNHWHSR LSKKRLTKNN QQQVTSVTKS 420 LQETQTAAIF EFDEANKQNQ NPPEILITDP IPIIPNNSRE PPKVLTGCTS PSPQLSADNC 480 SSSTSYVSAN YEEIYKIQSS KVSNYDHPSE NLDELHNFWE QPFTVDTLCM TMAEGYGQEA 540 TYTDPGFVFT A

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MVKAPGSEKP SLRKGSWAPE EDRKLIAYIR RYGIWNWSEM PKYAGLLRCG KSCRLRWMNY  60
LRPDIRRGNF TQEEDETIIK LHQQLGNRWS AIASRLPRRT DNEIKNHWHT RLSKKRLSKN  120
NQQQVLSVTE SLQDTQTAAI FEFDEANKQN QNPPEIFLAD PLPIVPNNSP KPPNVLTGCT  180
SPCPQLSTDN CSSSTSYVSA NYEEIYTIQI SEVNNYDHPS ENLDELHNFW EQPFTVDTLC  240
MTMAEGYGQE ATHTDPGFAV STPLWEYQQD YHFPTASSAS SYDADDDLWM VKAGGSEKPS  300
LRKGSWTPEE DWKLIAYIRR YGIWNWSEMP KYAGLLRCGK SCRLRWMNYL RPDIRRGNFT  360
QEEDETIIKL HEQLGNRWSA IASRLPGRTD NEIKNHWHSR LSKKRLTKNN QQQVTSVTKS  420
LQETQTAAIF EFDEANKQNQ NPPEILITDP IPIIPNNSRE PPKVLTGCTS PSPQLSADNC  480
SSSTSYVSAN YEEIYKIQSS KVSNYDHPSE NLDELHNFWE QPFTVDTLCM TMAEGYGQEA  540
TYTDPGFVFT A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-53	MYB family protein