PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34373.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Protein Properties

Length: 579aa MW: 64146.6 Da PI: 8.3854

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.6	1.2e-14	345	426	1	79
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+ GAY34373.1 345 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDI 426 89************************555566778***********99899999999.*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MSSSSKICFN KECKELKSER PRKGWLLRGG EFAELCDRCG SIYEEGRFCD TFHVNASGWR 60 CCESCGKRVH CGCITSVHAF TLLDAGGIEC MTCARKNVLV APTPSWPPSL FYQTPFPERI 120 KDLSVKNWTQ LAGSGPVPWR QAPSLFNSSI PQPELRPRLP YEVDLSAGID RINASERLSV 180 PSLEKRKLED FSERLMNGGL KSGSRDIPEN ANAGWNQFRA SRSNCDMQPS SCLNKPQQSS 240 TLKDDSSTPH FGLAVSYASP SETNSQIGVS GSHLRPVVQP PLVKQFHGNL PNGADSLGET 300 QVRNGRPRVD ARGRSQLLPR YWPRFTDQDL QQISGDSNSV ITPLFEKMLS ASDAGRIGRL 360 VLPKKCAEAY FPPISQPEGL PLKVQDSKGK EWIFQFRFWP NNNSRMYVLE GVTPCIQNMQ 420 LQAGDIDSVV LLFAVTFSRL EPEGKLVMGF RKASSASASD QDNEANKAGT GIPANGHAEL 480 ADPSSWSKVD KSGYIATEAL GAKSSISRKR KNTTLGSKSK RLKIENEDVI ELKLTWEEAQ 540 GLLRPPPNNV PSVVVIEGYE FEEYEVPYLT RSFFCSKHT

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MSSSSKICFN KECKELKSER PRKGWLLRGG EFAELCDRCG SIYEEGRFCD TFHVNASGWR  60
CCESCGKRVH CGCITSVHAF TLLDAGGIEC MTCARKNVLV APTPSWPPSL FYQTPFPERI  120
KDLSVKNWTQ LAGSGPVPWR QAPSLFNSSI PQPELRPRLP YEVDLSAGID RINASERLSV  180
PSLEKRKLED FSERLMNGGL KSGSRDIPEN ANAGWNQFRA SRSNCDMQPS SCLNKPQQSS  240
TLKDDSSTPH FGLAVSYASP SETNSQIGVS GSHLRPVVQP PLVKQFHGNL PNGADSLGET  300
QVRNGRPRVD ARGRSQLLPR YWPRFTDQDL QQISGDSNSV ITPLFEKMLS ASDAGRIGRL  360
VLPKKCAEAY FPPISQPEGL PLKVQDSKGK EWIFQFRFWP NNNSRMYVLE GVTPCIQNMQ  420
LQAGDIDSVV LLFAVTFSRL EPEGKLVMGF RKASSASASD QDNEANKAGT GIPANGHAEL  480
ADPSSWSKVD KSGYIATEAL GAKSSISRKR KNTTLGSKSK RLKIENEDVI ELKLTWEEAQ  540
GLLRPPPNNV PSVVVIEGYE FEEYEVPYLT RSFFCSKHT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	523	KRKNTTLGSKSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	1e-132	B3 family protein