PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34379.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Protein Properties

Length: 555aa MW: 60558 Da PI: 6.7041

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.2	3e-13	2	79	5	79
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+ GAY34379.1 2 LSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDI 79 5789******************555566778***********99899999999.*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDS KGKEWIFQFR FWPNNNSRMY 60 VLEGVTPCIQ NMQLQAGDID SVVLLFAVTF SRLEPEGKLV MGFRKASSAS ASDQDNEANK 120 AGTGIPANGH AELADPSSWS KVDKSGYIAT EALGAKSSIS RKRKNTTLGS KSKRLKIENE 180 DVIELKLTWE EAQGLLRPPP NNVPSVVVIE GYEFEEYEDA PILGKPTIFA TDNVGEKIQW 240 VQCEDCSKWR KVPANARLPS KWTCSGNLWD PERSVCSAAQ ELREEQLEDL IAPNNPASSK 300 KLKAAKREPD CVEALEGLDT LANLAILGEG EGLTASSQAT TKHPRHRPGC SCIVCIQPPS 360 GKGPKHKQTC TCNVCLTVKR RFHTLMLRRE KKQSEKDAET SRKKQQQQKL PVPEKSADDD 420 PLSCSKTGNN SPNEKKVVSE GSDDDSSRIK SSTSPFKGQI DLNIQPEREE ELSPGSDSGS 480 MIRLLQDATE KYLRQQRLSS SGVNTSSVEN EGLQGGVTGE KISNGITLDG SHQDTDEDHH 540 GSLSVKASAS ISATG

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDS KGKEWIFQFR FWPNNNSRMY  60
VLEGVTPCIQ NMQLQAGDID SVVLLFAVTF SRLEPEGKLV MGFRKASSAS ASDQDNEANK  120
AGTGIPANGH AELADPSSWS KVDKSGYIAT EALGAKSSIS RKRKNTTLGS KSKRLKIENE  180
DVIELKLTWE EAQGLLRPPP NNVPSVVVIE GYEFEEYEDA PILGKPTIFA TDNVGEKIQW  240
VQCEDCSKWR KVPANARLPS KWTCSGNLWD PERSVCSAAQ ELREEQLEDL IAPNNPASSK  300
KLKAAKREPD CVEALEGLDT LANLAILGEG EGLTASSQAT TKHPRHRPGC SCIVCIQPPS  360
GKGPKHKQTC TCNVCLTVKR RFHTLMLRRE KKQSEKDAET SRKKQQQQKL PVPEKSADDD  420
PLSCSKTGNN SPNEKKVVSE GSDDDSSRIK SSTSPFKGQI DLNIQPEREE ELSPGSDSGS  480
MIRLLQDATE KYLRQQRLSS SGVNTSSVEN EGLQGGVTGE KISNGITLDG SHQDTDEDHH  540
GSLSVKASAS ISATG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	176	KRKNTTLGSKSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-141	B3 family protein