PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34499.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LSD

Protein Properties

Length: 151aa MW: 16732.1 Da PI: 7.6375

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.2	1.5e-14	62	86	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YPrGA++V+C++C+tV GAY34499.1 62 CGSCRQLLAYPRGARHVKCSCCQTV 86 ************************9 PP
2	zf-LSD1	41.1	2.9e-13	100	124	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GA+sVRC++C +V GAY34499.1 100 CASCAVLLMYPYGASSVRCSSCRFV 124 **********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence
MAMAVYLVNP SYYRSQIQME NREKESMENQ EENEEAGPPP GWQPIPPPLP VPSPSEMAQM 60 VCGSCRQLLA YPRGARHVKC SCCQTVNFVL EAHQVGQVKC ASCAVLLMYP YGASSVRCSS 120 CRFVTEIGDH NRRAPWSVQQ GQSAPPSNTV R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-42	LSD family protein