PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34569.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 817aa MW: 90325.8 Da PI: 6.6196

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8e-07	234	254	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ff + G+C G++C+F H+ GAY34569.1 234 ICDFFTK-GWCIKGNSCRFLHV 254 89999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MSASSAVAAT RTDDVDEVDN LSDSPNDVSE DRNDVSEKVE SEEHKSHVES GSSSREKSKV 60 RLPSDTIAIE ESRDNFDCSN GPFSRQKVVS SKNHEESKYL KSGKHLTPAE DNGSQEYEIS 120 KKYVGAFLPV KARKEQNELH TDGEVHLHNS QIMESETTSP SSLTRKCMAG GVRIRDCLGE 180 GTSVEESKPM DTYSADDKQR MESSYSRFVS PAVRIRSLSP GAEIKDGNKR PAVICDFFTK 240 GWCIKGNSCR FLHVKDDVNN TTQLLGEDVA TASVKASLKT DAQFDEGSRN MTKRSRMPSF 300 PDALACSGGN DDLFFSDLSS ERILTQERGE SKRLPQFQEN HRLSLLQKEN TSSDNSPSSR 360 EDIGCSLSSK DAERESFRHN WPADYGNCAS LINEGSSPIF RNNMHLEYRS SSIGSAVLSG 420 NYHSGNPSTY PISLEERPWI QSKYMHNDYS SPAFSHAMNS SLGTSGPTSS GFPSHHISTW 480 TGLSLPFSSA SLSASPLDAK KLLDSNRECR NSRLALFLRS TSPFSVSEPE KPQISSDYKT 540 KISSNDWEPS VPFQPSFVII DTSSPGSKYD PLRDSFDSPK IGHISLKLAF SSVGDSALNT 600 SDQKLCGDSM LSNTVVPGCN VDKSSVSSHG RLSENVVDKN CCTARNDSLA DSEEGVGTSI 660 VDEQNGAMPK ENDPSVSTYF KDISKSKKPN AKYDSRIQND RCRRNKEPKV DRARQNSEMD 720 LEHKADGDGR KESKLMKHFR NDLVEFVKEL LKPSWREGRL SKDAHNTIVK KAVDKVLATL 780 HPHQIPTTME STKQYLSSSQ PKIAKLVEGY VDKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MSASSAVAAT RTDDVDEVDN LSDSPNDVSE DRNDVSEKVE SEEHKSHVES GSSSREKSKV  60
RLPSDTIAIE ESRDNFDCSN GPFSRQKVVS SKNHEESKYL KSGKHLTPAE DNGSQEYEIS  120
KKYVGAFLPV KARKEQNELH TDGEVHLHNS QIMESETTSP SSLTRKCMAG GVRIRDCLGE  180
GTSVEESKPM DTYSADDKQR MESSYSRFVS PAVRIRSLSP GAEIKDGNKR PAVICDFFTK  240
GWCIKGNSCR FLHVKDDVNN TTQLLGEDVA TASVKASLKT DAQFDEGSRN MTKRSRMPSF  300
PDALACSGGN DDLFFSDLSS ERILTQERGE SKRLPQFQEN HRLSLLQKEN TSSDNSPSSR  360
EDIGCSLSSK DAERESFRHN WPADYGNCAS LINEGSSPIF RNNMHLEYRS SSIGSAVLSG  420
NYHSGNPSTY PISLEERPWI QSKYMHNDYS SPAFSHAMNS SLGTSGPTSS GFPSHHISTW  480
TGLSLPFSSA SLSASPLDAK KLLDSNRECR NSRLALFLRS TSPFSVSEPE KPQISSDYKT  540
KISSNDWEPS VPFQPSFVII DTSSPGSKYD PLRDSFDSPK IGHISLKLAF SSVGDSALNT  600
SDQKLCGDSM LSNTVVPGCN VDKSSVSSHG RLSENVVDKN CCTARNDSLA DSEEGVGTSI  660
VDEQNGAMPK ENDPSVSTYF KDISKSKKPN AKYDSRIQND RCRRNKEPKV DRARQNSEMD  720
LEHKADGDGR KESKLMKHFR NDLVEFVKEL LKPSWREGRL SKDAHNTIVK KAVDKVLATL  780
HPHQIPTTME STKQYLSSSQ PKIAKLVEGY VDKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-42	C3H family protein