PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY34840.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 30188.3 Da    PI: 9.5137
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY34840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-312878151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
  GAY34840.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 78
                79***********************************************95 PP
2K-box63.76.9e-22961954100
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLeksl....kkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 s++ s +ea+a+ +qqe+akL+ +i+n+q+++R++lGe+L+ L++keL+++e++Lek+l      i + +++  l +ie+l +ke +l++ n+ Lr+k+
  GAY34840.1  96 SNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKALfkwgGGIHNFRSDDRLLNIEDL-MKEVDLHNSNQLLRAKI 193
                 4444599****************************************************4444458888888888889988.78999*********999 PP

       K-box  99 ee 100
                 +e
  GAY34840.1 194 AE 195
                 86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MAFPNELAAG REELSPKRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EIALIVFSSR GRLYEYSNNS VKSTIDRYKK ATADTSNTGS ICEANAQFYQ QEAAKLRIQI  120
SNMQNSNRNM LGESLSGLNF KELKNMETRL EKALFKWGGG IHNFRSDDRL LNIEDLMKEV  180
DLHNSNQLLR AKIAENERGQ QNMNLMQGGS SYEIIQSQPF DSRSYFQVNA LQPTNHYPRQ  240
DQMALQLVCA LKIAIRCSEE INFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-109MIKC_MADS family protein