PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34841.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28189 Da PI: 10.0579

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.7	2.4e-31	28	78	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+ GAY34841.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 78 79***********************************************95 PP
2	K-box	112	6.1e-37	96	192	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s +ea+a+ +qqe+akL+ +i+n+q+++R++lGe+L+ L++keL+++e++Lek++++iRskKnell+++ie++qk+e +l++ n+ Lr+k++e GAY34841.1 96 SNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 4444599***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MAFPNELAAG REELSPKRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA 60 EIALIVFSSR GRLYEYSNNS VKSTIDRYKK ATADTSNTGS ICEANAQFYQ QEAAKLRIQI 120 SNMQNSNRNM LGESLSGLNF KELKNMETRL EKGISRIRSK KNELLFAEIE YMQKREVDLH 180 NSNQLLRAKI AENERGQQNM NLMQGGSSYE IIQSQPFDSR SYFQVNALQP TNHYPRQDQM 240 ALQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-128	MIKC_MADS family protein