PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY35552.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 997aa MW: 110918 Da PI: 7.918

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY35552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.3e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ GAY35552.1 149 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence
MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF 60 PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL 120 GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS 240 TNNSDQTKDQ DLLSHLFRNL AGVVGTSNVR NLSGLLQGSQ GLLNAGPSNG NVEKVPDLVS 300 TGPEPSRPST SACMTDNRIG FSEPMRSVGQ CGTVPASDLL QKKISTNDAH SGRVQALSAS 360 QSIEMFPSRS SFSAKANEPE ATFGRSKMSN IDLNNVYDDS QERVENLELS HAPASANSDS 420 TSSQSQSSSS GEAQSRTDRI VFKLFGKDPN DFPLVLRRQI LDWLSHSPTD IESYIRPGCI 480 VLTIYLRLGK PTWEELCCDL GSSLRRLLEG SDDSFWRTGW LYARVQHSVA FIYNGQVVLD 540 TPLLLKSHKS CRISSIKPIA VPVSERVKFV VKGFNLSRST TRLLCAIEGS YLVQETCYDL 600 MGGADTVNEN DELQCLSFPC SIPNVFGRGF IEVEDHGLSS SFVPFIVAEQ EVCSEICMLE 660 SAIEAAEISD DFQKIAEKTE VKNQALDFLH EMGWLLHRSH MKFRLGHLHP NFYFFPFKRF 720 KWLLEFSMEH DWCAVVKKLL GILFDGTVDT GDHTSSELAI LEMGLLHKAV RRNCRPMVEL 780 LLNYAPDNVL DKPGSRQKQL VDRAHSGFIF KPNVIGPAGL TPLHVAACRD DAENVLDALT 840 DDPGSVGIEA WKSAQDSTGL TPNDYASLRA HHSYIHLVQR KINKKSSESG RVILDIPGSI 900 VDWDSKQKPS NGNKSSRVLS LQTEKIMTKV MQQQCRLCEQ KVAYRNMRSS LVYRPVMLSM 960 VAIAAVCVCV ALLFKSSPEV LYIFRPFRWE LLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence

MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF  60
PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL  120
GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS  240
TNNSDQTKDQ DLLSHLFRNL AGVVGTSNVR NLSGLLQGSQ GLLNAGPSNG NVEKVPDLVS  300
TGPEPSRPST SACMTDNRIG FSEPMRSVGQ CGTVPASDLL QKKISTNDAH SGRVQALSAS  360
QSIEMFPSRS SFSAKANEPE ATFGRSKMSN IDLNNVYDDS QERVENLELS HAPASANSDS  420
TSSQSQSSSS GEAQSRTDRI VFKLFGKDPN DFPLVLRRQI LDWLSHSPTD IESYIRPGCI  480
VLTIYLRLGK PTWEELCCDL GSSLRRLLEG SDDSFWRTGW LYARVQHSVA FIYNGQVVLD  540
TPLLLKSHKS CRISSIKPIA VPVSERVKFV VKGFNLSRST TRLLCAIEGS YLVQETCYDL  600
MGGADTVNEN DELQCLSFPC SIPNVFGRGF IEVEDHGLSS SFVPFIVAEQ EVCSEICMLE  660
SAIEAAEISD DFQKIAEKTE VKNQALDFLH EMGWLLHRSH MKFRLGHLHP NFYFFPFKRF  720
KWLLEFSMEH DWCAVVKKLL GILFDGTVDT GDHTSSELAI LEMGLLHKAV RRNCRPMVEL  780
LLNYAPDNVL DKPGSRQKQL VDRAHSGFIF KPNVIGPAGL TPLHVAACRD DAENVLDALT  840
DDPGSVGIEA WKSAQDSTGL TPNDYASLRA HHSYIHLVQR KINKKSSESG RVILDIPGSI  900
VDWDSKQKPS NGNKSSRVLS LQTEKIMTKV MQQQCRLCEQ KVAYRNMRSS LVYRPVMLSM  960
VAIAAVCVCV ALLFKSSPEV LYIFRPFRWE LLKYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV
2	219	225	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein