PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY35554.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 1046aa MW: 116232 Da PI: 7.9224

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY35554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	7.7e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ GAY35554.1 149 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence
MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF 60 PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL 120 GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS 240 SSYLLISLLR ILSNMHLTDI GFVDANNSDQ TKDQDLLSHL FRNLAGVVGT SNVRNLSGLL 300 QGSQGLLNAG PSNGNVEKVP DLVSTGPEPS RPSTSACMTD NRIGFSEPMR SVGQCGTVPA 360 SDLLQKKIST NDAHSGRVQA LSASQSIEMF PSRSSFSAKA NEPEATFGRS KMSNIDLNNV 420 YDDSQERVEN LELSHAPVNP GPVSLYSPLW LHPGSNKSSP PQASANSDST SSQSQSSSSG 480 EAQSRTDRIV FKLFGKDPND FPLVLRRQIL DWLSHSPTDI ESYIRPGCIV LTIYLRLGKP 540 TWEELCCDLG SSLRRLLEGS DDSFWRTGWL YARVQHSVAF IYNGQVVLDT PLLLKSHKSC 600 RISSIKPIAV PVSERVKFVV KGFNLSRSTT RLLCAIEGSY LVQETCYDLM GGADTVNEND 660 ELQCLSFPCS IPNVFGRGFI EVEDHGLSSS FVPFIVAEQE VCSEICMLES AIEAAEISDD 720 FQKIAEKTEV KNQALDFLHE MGWLLHRSHM KFRLGHLHPN FYFFPFKRFK WLLEFSMEHD 780 WCAVVKKLLG ILFDGTVDTG DHTSSELAIL EMGLLHKAVR RNCRPMVELL LNYAPDNVLD 840 KPGSRQKQLV DRAHSGFIFK PNVIGPAGLT PLHVAACRDD AENVLDALTD DPGSVGIEAW 900 KSAQDSTGLT PNDYASLRAH HSYIHLVQRK INKKSSESGR VILDIPGSIV DWDSKQKPSN 960 GNKSSRVLSL QTEKIMTKVM QQQCRLCEQK VAYRNMRSSL VYRPVMLSMV AIAAVCVCVA 1020 LLFKSSPEVL YIFRPFRWEL LKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence

MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF  60
PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL  120
GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS  240
SSYLLISLLR ILSNMHLTDI GFVDANNSDQ TKDQDLLSHL FRNLAGVVGT SNVRNLSGLL  300
QGSQGLLNAG PSNGNVEKVP DLVSTGPEPS RPSTSACMTD NRIGFSEPMR SVGQCGTVPA  360
SDLLQKKIST NDAHSGRVQA LSASQSIEMF PSRSSFSAKA NEPEATFGRS KMSNIDLNNV  420
YDDSQERVEN LELSHAPVNP GPVSLYSPLW LHPGSNKSSP PQASANSDST SSQSQSSSSG  480
EAQSRTDRIV FKLFGKDPND FPLVLRRQIL DWLSHSPTDI ESYIRPGCIV LTIYLRLGKP  540
TWEELCCDLG SSLRRLLEGS DDSFWRTGWL YARVQHSVAF IYNGQVVLDT PLLLKSHKSC  600
RISSIKPIAV PVSERVKFVV KGFNLSRSTT RLLCAIEGSY LVQETCYDLM GGADTVNEND  660
ELQCLSFPCS IPNVFGRGFI EVEDHGLSSS FVPFIVAEQE VCSEICMLES AIEAAEISDD  720
FQKIAEKTEV KNQALDFLHE MGWLLHRSHM KFRLGHLHPN FYFFPFKRFK WLLEFSMEHD  780
WCAVVKKLLG ILFDGTVDTG DHTSSELAIL EMGLLHKAVR RNCRPMVELL LNYAPDNVLD  840
KPGSRQKQLV DRAHSGFIFK PNVIGPAGLT PLHVAACRDD AENVLDALTD DPGSVGIEAW  900
KSAQDSTGLT PNDYASLRAH HSYIHLVQRK INKKSSESGR VILDIPGSIV DWDSKQKPSN  960
GNKSSRVLSL QTEKIMTKVM QQQCRLCEQK VAYRNMRSSL VYRPVMLSMV AIAAVCVCVA  1020
LLFKSSPEVL YIFRPFRWEL LKYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV
2	219	225	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein