PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY35970.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 1119aa MW: 125057 Da PI: 8.6756

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY35970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.4e-08	46	86	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqc 40 W++eE e++++a +++G++ Wk++ + + +Rt++++ GAY35970.1 46 QWSKEELERFYEAYRKYGKD-WKKVRSDFStaavRNRTAEMV 86 6***************99.***9999888888888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 1119 aa Download sequence
MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR 60 KYGKDWKKVR SDFSTAAVRN RTAEMVEALF TMNRAYLSLP EGTASVVGLI AMMTDHYGIL 120 AGSDGEQESD EATGSSQKSQ KCAGGKFQNP PPKGSDGPSP DLLNFQSAAP NYGCLSLLKK 180 RRSGSRPRAV AKRTPRVPVS YSYDKDNTEK YISPIKQGLK PRLGSIDDDV AHEIALALTE 240 ASQRGGSLLV SQTPKRKRGK PSPVQKGSRT CDVSEMNSSK PYGSEMDEDG RELSLGSTDA 300 DNGYYSRDKI YLMDAETADT IEIQQKGKRY HSKKLKQEES VSNHLDDIKE ACSGTEEGQD 360 MVVTKGKFAM EIADEKNSTS YSKGSKKRSK KVLFKRDESS EFDALQTLAD LSLMMPETTA 420 DTELSLQLKE EKPEAVNESK LKGNRSSTGV KDTAIKTSKL GKDCTDDVSV IPESEEGNHL 480 TNSGNRTKRQ KFLPIKLRMD ATEELKKFIS KGKRSLSASQ SKHGKLVKPP EHTSSTDHEK 540 EGNNSASSTA HVRTANQVNL PTKVRSRRKM NMRKLLIERD KMSSEDILKS SEDILNDHNR 600 TNSSFFDRAI KQKEQLSNCL SWYQVRVWCV CEWFYSTIDY PWFAKREFVE YLDHVGLSHV 660 PRLTRVEWGV IRSSLGRPRR FSEQFLKEEK EKLNQYRESV RNHYSELRSG TKEGLPTDLA 720 RPLYVGQRII AVHPRTREIC DGSVLTVEHS RYKVQFDKRE LGIEFVQDID CMPLNPLENM 780 PASLTRPNVA FGKFMDNFTE LQMNGQPRER DIEGYMKFTP CENLETAYAP SHISPSTNYP 840 INNLLQQHKG VSYTDSEVHV GSTGQAKEED VLALSHLRHA LDKKVLHLVA SALFCLRQRN 900 TYQGNTCLTG LKPMSGLGNL GGGLPNSFDH SAYQTPESGP HVVEVVESSR SKAQKMVDVA 960 LQALSSLEKE GNGIERIEEA MDYVNNKLAG NDSGMPSIRL STSADLVHSS RNSQDQQLET 1020 HTTNLLANSR APDSTLNNSS DENSAHIPLE LIAHCVAALF MIQRCTERDF PPADVALVLD 1080 SAVTSLQPCC SQNLPVYAEI QKCMGIIRNQ ILALIPTST

Sequence ? help Back to Top

Protein Sequence Length: 1119 aa Download sequence

MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR  60
KYGKDWKKVR SDFSTAAVRN RTAEMVEALF TMNRAYLSLP EGTASVVGLI AMMTDHYGIL  120
AGSDGEQESD EATGSSQKSQ KCAGGKFQNP PPKGSDGPSP DLLNFQSAAP NYGCLSLLKK  180
RRSGSRPRAV AKRTPRVPVS YSYDKDNTEK YISPIKQGLK PRLGSIDDDV AHEIALALTE  240
ASQRGGSLLV SQTPKRKRGK PSPVQKGSRT CDVSEMNSSK PYGSEMDEDG RELSLGSTDA  300
DNGYYSRDKI YLMDAETADT IEIQQKGKRY HSKKLKQEES VSNHLDDIKE ACSGTEEGQD  360
MVVTKGKFAM EIADEKNSTS YSKGSKKRSK KVLFKRDESS EFDALQTLAD LSLMMPETTA  420
DTELSLQLKE EKPEAVNESK LKGNRSSTGV KDTAIKTSKL GKDCTDDVSV IPESEEGNHL  480
TNSGNRTKRQ KFLPIKLRMD ATEELKKFIS KGKRSLSASQ SKHGKLVKPP EHTSSTDHEK  540
EGNNSASSTA HVRTANQVNL PTKVRSRRKM NMRKLLIERD KMSSEDILKS SEDILNDHNR  600
TNSSFFDRAI KQKEQLSNCL SWYQVRVWCV CEWFYSTIDY PWFAKREFVE YLDHVGLSHV  660
PRLTRVEWGV IRSSLGRPRR FSEQFLKEEK EKLNQYRESV RNHYSELRSG TKEGLPTDLA  720
RPLYVGQRII AVHPRTREIC DGSVLTVEHS RYKVQFDKRE LGIEFVQDID CMPLNPLENM  780
PASLTRPNVA FGKFMDNFTE LQMNGQPRER DIEGYMKFTP CENLETAYAP SHISPSTNYP  840
INNLLQQHKG VSYTDSEVHV GSTGQAKEED VLALSHLRHA LDKKVLHLVA SALFCLRQRN  900
TYQGNTCLTG LKPMSGLGNL GGGLPNSFDH SAYQTPESGP HVVEVVESSR SKAQKMVDVA  960
LQALSSLEKE GNGIERIEEA MDYVNNKLAG NDSGMPSIRL STSADLVHSS RNSQDQQLET  1020
HTTNLLANSR APDSTLNNSS DENSAHIPLE LIAHCVAALF MIQRCTERDF PPADVALVLD  1080
SAVTSLQPCC SQNLPVYAEI QKCMGIIRNQ ILALIPTST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	38	KKKAENADRSGKRKRK
2	254	261	PKRKRGKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein