PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36012.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 338aa MW: 36296.7 Da PI: 8.1442

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.6e-12	43	68	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ rtG+C yG+rC+F+H++ GAY36012.1 43 DEADCIHYVRTGFCAYGSRCRFNHPR 68 6799********************96 PP
2	zf-CCCH	41.1	3e-13	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCkyG++Ck++H++ GAY36012.1 90 QPVCQYYMRTGTCKYGASCKYHHPR 114 689********************96 PP
3	zf-CCCH	38.8	1.5e-12	277	302	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG Ck+G++C+F+H++ GAY36012.1 277 GQQECQYYMKTGDCKFGSSCRFHHPR 302 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MERHGRVSEG SQSDPSPEWT APGTETGPEG LGVGAESYPE RPDEADCIHY VRTGFCAYGS 60 RCRFNHPRDR GSVMGAARAG GGEFPERVGQ PVCQYYMRTG TCKYGASCKY HHPRQGAGSV 120 SNVSLNYYGY PLRPPAGVPA PTPSPAPQVA AVPTPVPAPA LYPPLQSPSV PSAQQYGVVV 180 ARPPLLHGSY VQGPYGPVLV SPSMFSLQGW SPYATSLNPI SSPGTGTQSS VGSSSIYGIT 240 QLSASAPAYT GTYQSLPSSV GPSSSSQKEH PFPERPGQQE CQYYMKTGDC KFGSSCRFHH 300 PRELIVPKMD VTLSPFGLPL RPVSFFWHLL LHYYALHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	2e-86	C3H family protein