PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36575.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 391aa MW: 43850.9 Da PI: 9.0849

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.7	1.2e-12	71	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g GAY36575.1 71 SKYRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 127 89*****************88887786625555.******************98 PP
2	AP2	45.8	1.5e-14	167	215	4	55
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GV+ ++ + rW+A+I + g +k+ +lg++gt eeAa a++ a+ + +g GAY36575.1 167 RGVSKHHHNRRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEHRG 215 8************99966...3.6********************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MENGALKSGG RGGDMEAVLV PACIINKRRR RERDPSLGIG FNNVNQQVEQ QADQAAAATT 60 AAAATTVKRS SKYRGVSRHR WTGRYEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL 120 AALKYWGTST FTNFPVSEYE KEIEIMKTVT REEYLATLRR RSSGFSRGVS KHHHNRRWEA 180 RIGRVFGNKY LYLGTYGTQE EAAHAYDIAA IEHRGINAVT NFDISTYIRW LKPAAGGNSH 240 NPAFQEPKPI LEYSPPTSSL LSNHILTEGH QITDISIFND SNPFPLQDQD IPKKQDSFQA 300 NIKSSLPFSP CTKSSSSSPT ALSLLLRSSV FKELVEKNPN NSAEVNIEEN DTKNGPKIGS 360 KNEVEETLYD EFVINNPVQY ICPSSKMYFM A

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MENGALKSGG RGGDMEAVLV PACIINKRRR RERDPSLGIG FNNVNQQVEQ QADQAAAATT  60
AAAATTVKRS SKYRGVSRHR WTGRYEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL  120
AALKYWGTST FTNFPVSEYE KEIEIMKTVT REEYLATLRR RSSGFSRGVS KHHHNRRWEA  180
RIGRVFGNKY LYLGTYGTQE EAAHAYDIAA IEHRGINAVT NFDISTYIRW LKPAAGGNSH  240
NPAFQEPKPI LEYSPPTSSL LSNHILTEGH QITDISIFND SNPFPLQDQD IPKKQDSFQA  300
NIKSSLPFSP CTKSSSSSPT ALSLLLRSSV FKELVEKNPN NSAEVNIEEN DTKNGPKIGS  360
KNEVEETLYD EFVINNPVQY ICPSSKMYFM A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	105	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-68	AP2 family protein