PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36702.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 367aa MW: 40397.7 Da PI: 7.828

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++q+G g+W++ +++ g+ R++k+c++rw +yl GAY36702.1 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.3	6.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l GAY36702.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLAFIE QHGHGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKT NPLGQPKDTA NLSHMAQWES ARLEAEARLV RESKLVSKPP PANHPHDHQL 180 GLGSSKAAAP AGRPQCLDVL KAWQGVVSGM FGAACRDNNL ESPTSTLNFN EHVLLSGPPA 240 VGLFSDNLVG NSIPCFEKSG QIIEGTKDNL DNSSMPIGLH EMTYATDGSV ATWFQDSFRT 300 AENIMEGLSS DLMICDSVDN DHNSSIIINA AESSTGNVGG NFDQENKNFW NGLMNLVSAS 360 TTWSPVF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLAFIE QHGHGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKT NPLGQPKDTA NLSHMAQWES ARLEAEARLV RESKLVSKPP PANHPHDHQL  180
GLGSSKAAAP AGRPQCLDVL KAWQGVVSGM FGAACRDNNL ESPTSTLNFN EHVLLSGPPA  240
VGLFSDNLVG NSIPCFEKSG QIIEGTKDNL DNSSMPIGLH EMTYATDGSV ATWFQDSFRT  300
AENIMEGLSS DLMICDSVDN DHNSSIIINA AESSTGNVGG NFDQENKNFW NGLMNLVSAS  360
TTWSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	1e-110	MYB family protein