PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36993.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 725aa MW: 79046.5 Da PI: 6.5501

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg GAY36993.1 302 PCPDFRK-GACRRGDMCEYAHG 322 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MCCGPDKSES NTEDMNNNST AETEDSFTSM LELASNNDVE GFKRMLERDP SSVDEVGLWY 60 GRVNGSKQMV SEHRTPLMVA ATYGSVDVLK LILLHSSADV NVSCGSDRTT ALHCAASGGS 120 ANVVDVVRLL LSAGADPDCA DANGHRPIDV SVLPPKLDSM RAILEDLFGS KNSSVVVAAS 180 GAEHNLTVSI GSSNSDYSSP LLTASASGSP PSPYRLVSSP MALKFNDVSF GAGAEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKIRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCDRRVCF FAHTAEELRP 360 LYVSNGSVVP SPRSSVSGAS VMDMAAALLL PGSPSSMSGM SPNPFSQPMS PSGNCNLQSS 420 MMWPQPNVPT LNLPGSNIQS SRLRSSLSAR DILPDNFSSL SDFDSQQHIL NDLTCFSQTR 480 NNSVSLSRSC RPKTLTPSNL DELFSAEISS SPRFSDQAVF SPTHKSSVLN QFQQPQSMLS 540 PIKTNVFSPK NVEHPLLQAS FRVGSPGRMS PRSVEPISPM GPRLAAFGQR EKQQQQLRSL 600 SSRDPISNNP IPNIGSPRNV NSSWSKWGSP SGKLDWSIKG DELELLRRSS SCELRNNNHG 660 EPDLSWIHSI VKESPPEMMK EKTANPVVTT ASSGEALNSN SQADSFDHSV IGAWLEQMQL 720 DQLVV

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MCCGPDKSES NTEDMNNNST AETEDSFTSM LELASNNDVE GFKRMLERDP SSVDEVGLWY  60
GRVNGSKQMV SEHRTPLMVA ATYGSVDVLK LILLHSSADV NVSCGSDRTT ALHCAASGGS  120
ANVVDVVRLL LSAGADPDCA DANGHRPIDV SVLPPKLDSM RAILEDLFGS KNSSVVVAAS  180
GAEHNLTVSI GSSNSDYSSP LLTASASGSP PSPYRLVSSP MALKFNDVSF GAGAEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKIRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCDRRVCF FAHTAEELRP  360
LYVSNGSVVP SPRSSVSGAS VMDMAAALLL PGSPSSMSGM SPNPFSQPMS PSGNCNLQSS  420
MMWPQPNVPT LNLPGSNIQS SRLRSSLSAR DILPDNFSSL SDFDSQQHIL NDLTCFSQTR  480
NNSVSLSRSC RPKTLTPSNL DELFSAEISS SPRFSDQAVF SPTHKSSVLN QFQQPQSMLS  540
PIKTNVFSPK NVEHPLLQAS FRVGSPGRMS PRSVEPISPM GPRLAAFGQR EKQQQQLRSL  600
SSRDPISNNP IPNIGSPRNV NSSWSKWGSP SGKLDWSIKG DELELLRRSS SCELRNNNHG  660
EPDLSWIHSI VKESPPEMMK EKTANPVVTT ASSGEALNSN SQADSFDHSV IGAWLEQMQL  720
DQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein