PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37287.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 190aa MW: 21657.6 Da PI: 9.8426

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.9e-19	43	97	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq + Le+ F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k GAY37287.1 43 RKKLRLTIEQSRLLEDSFKLHTTLNSSQKQALAEQLNLEPRQVEVWFQNRRARTK 97 6778899**********************************************98 PP
2	HD-ZIP_I/II	118	5.3e-38	43	131	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+ eq++lLE+sF+ +++L++++K++la++L+l+prqv+vWFqnrRARtk+kq E+d+e+Lk+++++l++en+rL+ke +eL++ GAY37287.1 43 RKKLRLTIEQSRLLEDSFKLHTTLNSSQKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQS 131 69*************************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MAARPSLKFG YHLVLLLATD GIDFDFDDGV GNSNSKRINI SGRKKLRLTI EQSRLLEDSF 60 KLHTTLNSSQ KQALAEQLNL EPRQVEVWFQ NRRARTKLKQ NEVDCEFLKK CCESLTDENK 120 RLKKELQELQ SAKAGASSPL FIQLQKATTC PSCEKIMRTS DEGKNAGVNT DVVLKNNKWQ 180 RRFNATNEPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	100	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-54	HD-ZIP family protein