PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY37478.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Nin-like
Protein Properties Length: 233aa    MW: 26238.7 Da    PI: 6.8577
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY37478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK77.51.5e-24141191252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 + +++l dl  yF+lpi++AA+ +++c+Tv+K+iCR+ G++RWPhRkiks+
  GAY37478.1 141 TGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 191
                 5689*********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MADPRAIVPY HDPHDNSYTE DIFNFINNPN PTFADLSLFE EPSSIPHSTN NPQSGGIITD  60
AGDPFDDPLF WDIGNNCNAG SFQAGPSGNQ AEMSDRGTPA IENAANMKAF PRWPVPPEPY  120
LCSCCLVLRE IIHTNVQRER TGKLTLRDLM IYFHLPIEEA ARRMKLCPTV VKKICRRDGL  180
HRWPHRKIKS IQRRMSVASG RLRSNDAEER ANAQIEIQRL QEEMAAACAG LTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-11Nin-like family protein