PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37848.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 747aa MW: 81528.3 Da PI: 6.443

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	323	343	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg GAY37848.1 323 PCPEFRK-GSCRQGDACEYAHG 343 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
GISRQSNSFV GGELSLVISC VIEPNKKRGE TFNWRSEKKE ISMCSGLKRK PTQTGFIMDT 60 DSQKQDGLCY NFSILLELTA SDDLDGFRKA IEEDGHDIDE SGLWYGRIIG SRKMGFEERT 120 PLMIASMFGS KDVVSYVIKS GHVDVNRACG SDGVTALHCA ASGGSANSVE VVKLLLNASA 180 DVNSVDAYGN RPADLIAKNC NLGFNSRKKV LQALLKGSGT GCVEEIDNLC DQVVYKMEEQ 240 EQPEISTPRV LKDGAEKKEY PVDLTLPDIK NGIYGTDEFR MYTFKVKPCS RAYSHDWTEC 300 PFVHPGENAR RRDPRKYHYS CVPCPEFRKG SCRQGDACEY AHGIFECWLH PAQYRTRLCK 360 DETNCNRRVC FFAHKPEELR PLYASTGSAV PSPRSFSANG SSFDMLSISP LALGSPSAMI 420 PPTSTPPLTP SGASSPMGGT MWNQPNIAPP TLQLPGSRLK SARNARDMDF DMELLRLENR 480 RRQQQLIDEI SSLSSPSGWA NSLSSAAPFS SSADRTGDMN RIGGVKPTNL DDIFGSLNPT 540 LMPQLQGTSL DASASQLQSP TGIQMRQNMN QQLRSSYPAS SSPVRPSQSF GIDTSGATAA 600 AVLSSRSAAF AKRSQSFIER NTVGRHSGFS SPDSTAAVMP SNLADWGSPD GKLDWGVQRE 660 DLNKLRKSAS FGIRSNGGSV ATSETSTPAT ADEPDVSWVQ SLVRDSPSIR SGQFGFEEQQ 720 CHLNSGGSEM LPAWVEQLYM EQEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

GISRQSNSFV GGELSLVISC VIEPNKKRGE TFNWRSEKKE ISMCSGLKRK PTQTGFIMDT  60
DSQKQDGLCY NFSILLELTA SDDLDGFRKA IEEDGHDIDE SGLWYGRIIG SRKMGFEERT  120
PLMIASMFGS KDVVSYVIKS GHVDVNRACG SDGVTALHCA ASGGSANSVE VVKLLLNASA  180
DVNSVDAYGN RPADLIAKNC NLGFNSRKKV LQALLKGSGT GCVEEIDNLC DQVVYKMEEQ  240
EQPEISTPRV LKDGAEKKEY PVDLTLPDIK NGIYGTDEFR MYTFKVKPCS RAYSHDWTEC  300
PFVHPGENAR RRDPRKYHYS CVPCPEFRKG SCRQGDACEY AHGIFECWLH PAQYRTRLCK  360
DETNCNRRVC FFAHKPEELR PLYASTGSAV PSPRSFSANG SSFDMLSISP LALGSPSAMI  420
PPTSTPPLTP SGASSPMGGT MWNQPNIAPP TLQLPGSRLK SARNARDMDF DMELLRLENR  480
RRQQQLIDEI SSLSSPSGWA NSLSSAAPFS SSADRTGDMN RIGGVKPTNL DDIFGSLNPT  540
LMPQLQGTSL DASASQLQSP TGIQMRQNMN QQLRSSYPAS SSPVRPSQSF GIDTSGATAA  600
AVLSSRSAAF AKRSQSFIER NTVGRHSGFS SPDSTAAVMP SNLADWGSPD GKLDWGVQRE  660
DLNKLRKSAS FGIRSNGGSV ATSETSTPAT ADEPDVSWVQ SLVRDSPSIR SGQFGFEEQQ  720
CHLNSGGSEM LPAWVEQLYM EQEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein