PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY38083.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 271aa    MW: 31504.6 Da    PI: 8.8202
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY38083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                ie +  r +t+ kR+ g+ KKAeE S+LC++  ++ii++++
  GAY38083.1 11 IEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPR 51
                899999*********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MGRGKLTMQL IEKEKARMIT YQKRKRGLKK KAEEFSTLCG VPTCMIIYGP RLNNRPVDVE  60
IWPKDEKDFM QVVNLYKDKA FSSVRGVKSL SLFDFFADRK RKVDENIAKT RKANYESLFS  120
TDDWDEMINR FSIDQLKQML VVFDEYIDVA TRKLTIMRGQ QQSCIAAADH HHDQALQMIP  180
YNYDFNPVDN PMMMLMMNGG DQMGSSMYNS MQHARCFDPM MGAMINNRLM MMNNPRADVG  240
IFGTTILQPL QHYEQQLPLL PSIYSSQMHG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.17e-23M-type_MADS family protein