PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY38117.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 249aa    MW: 27758 Da    PI: 6.7785
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY38117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-213089357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                +R+++tkeq++ Le+l+++  r+psae++++++++l    +++ ++V++WFqN++a++++
  GAY38117.1 30 SRWNPTKEQINMLESLYAQgIRTPSAEQIQQITTRLraygHIEGKNVFYWFQNHKARQRQ 89
                8*****************99**************************************97 PP
2Wus_type_Homeobox116.31.5e-372891265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RW+Pt+eQi++Le+ly +G+rtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq
         GAY38117.1 28 SSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 91
                       689***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEGDGDNNNN MDMVSDGGGG GGGTTLSSSS RWNPTKEQIN MLESLYAQGI RTPSAEQIQQ  60
ITTRLRAYGH IEGKNVFYWF QNHKARQRQK QKQERTAFIN RYLHKSAHQP APLFPPSTNV  120
VCGPYYLPRN DLGFYPQCTK VLIPGGSKMR AKTDQEMDKT TSYVGVGYDP EQPECNVMMH  180
TSNINNSDIS NQETLPLFPL HPTGILQAKT NAMLPSNSLE NSITPCIEKG PADQPFFDFF  240
SGQGCERTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-49WOX family protein