PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38252.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 495aa MW: 53608.8 Da PI: 7.0062

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	171	220	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GAY38252.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS 60 TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS 120 RSWIDLSFDK QQQQYQNQQP QQQEGGGEVR ATQQSSPVVK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK 240 NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKAYD KAAIKCNGRE 300 AVTNFEPSTY EGEMITEGSN EGGDHNLDLN LGISSSFGSG PKANEGHSQF LSGPYGAHGG 360 RTSRTENSTT AAVGDSASKG LMRTSEHPIF WNGAYPGLLT TEEKATEKRI ELGPPQGLPN 420 WAWQMHGQVS GTPASLLSSA ASSGFPFSAA PPSAAVLSSK PLNPSDVNLC FTSTNTTAPN 480 TSQFYYQMKL PQAPP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS  60
TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS  120
RSWIDLSFDK QQQQYQNQQP QQQEGGGEVR ATQQSSPVVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK  240
NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKAYD KAAIKCNGRE  300
AVTNFEPSTY EGEMITEGSN EGGDHNLDLN LGISSSFGSG PKANEGHSQF LSGPYGAHGG  360
RTSRTENSTT AAVGDSASKG LMRTSEHPIF WNGAYPGLLT TEEKATEKRI ELGPPQGLPN  420
WAWQMHGQVS GTPASLLSSA ASSGFPFSAA PPSAAVLSSK PLNPSDVNLC FTSTNTTAPN  480
TSQFYYQMKL PQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-113	AP2 family protein