PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38283.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 209aa MW: 22660.9 Da PI: 7.6581

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.1	1.3e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l+++pe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++ GAY38283.1 45 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQEIPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQA 143 7**********************************************************************************************9997 PP DUF260 100 e 100 e GAY38283.1 144 E 144 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MLKMENYEAA ATRNPSKVTS SRAGSSSPPP ISANSSAPPP VIMSPCAACK ILRRRCADKC 60 VLAPYFPPTE PAKFTIAHRV FGASNIIKFL QEIPESQRAD AVSSMVYEAS ARIRDPVYGC 120 AGAICQLQKQ VSELQAQLAK AQAEVVNMQC QQANLVALLY KEMGKSPQPN SPQSVDHFIT 180 SPESPEANPC SFFEDNNLSG SLWEPALWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-71	LBD family protein