PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38329.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 205aa MW: 22928.7 Da PI: 9.3182

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.3	5.9e-12	105	187	17	99
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 k ++P+ rik+i+k++ i+ ea l+ ka + f+ ++ ++ + + ++++l +aa+v++ ++dfl d vp++ GAY38329.1 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSDYVPEK 187 4679***********9999*********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MASSKKRKEE KAKLKNAETR KKAKPSPKKP KKSNKKTAIQ NGTVSESKDE VVVTPASSSI 60 NDSQQDSETE QEGRSQEQEA TNEKKKKPNK NGKKIERDDD DEVSKVCNFP MGRIKRIFKT 120 QSSDIGITGE AVFLVNKATD KFLEQFCEDA YECCAKDRKK SLAYKHLAAV VSEQSKYDFL 180 SDYVPEKIKA EDALAQRELA EGGEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	24	KKRKEEKAKLKNAETRKKAK
2	5	31	KKRKEEKAKLKNAETRKKAKPSPKKPK
3	11	22	KAKLKNAETRKK
4	27	33	PKKPKKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-30	NF-YC family protein