PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY38452.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 561aa    MW: 62143.1 Da    PI: 5.8635
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY38452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS255.61.8e-781715532374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 ++lL  cA a+++g+ +++q+lL  l+elasp+gd+++Rlaa+ ++AL ++l++  s+s++  +  p + s+++     ++l  f++ sP++ f + +a
  GAY38452.1 171 EQLLNPCAAAITAGNPTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSlsSSSTTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAFPNNIA 269
                 689**************************************************9522233333334444444444444444444*************** PP

        GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlv 182
                 N+ Il+ ++++     + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T +++ +++               ++  +L  fA+++++++++n l 
  GAY38452.1 270 NSSILQILAQDrhnqvQNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLVRLTIIAPTAENdqnaetpfsVGPPGDNYSLQLLGFAKSMNINLQINRLE 368
                 ********99878666777************************55666*******9977767777777666667789999******************9 PP

        GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpre 278
                 ++ l+dl+ ++ +++p+E+l+V+ +++lh+l    +s+++er+e+L+++++l+Pk v+++e+++d+   n ++F+++f++ +ey + ++ds++a +   
  GAY38452.1 369 SHPLQDLSAQMVSTSPEETLIVCTQFRLHHLN---HSTPDERTEFLRVLRRLEPKGVILSENNMDCscgNCGDFATGFARRVEYLWRFLDSTSAAF--- 461
                 99*****************************8...77778889*******************9776547888********************6665... PP

        GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + r + Er++++ e+ ++++    +r e +e + kW +r++ +GF    ++e+a +  ++llrk++ s++ rvee++g++ l Wk++p+ ++S W+
  GAY38452.1 462 -KGRESEERRVMEGEAAKALT----NRAEINEGKDKWCDRMRGVGFVGEVFGEDAIDGGRALLRKYDnSWETRVEERDGCIELRWKGQPVSFCSLWK 553
                 .45555555555555666665....46677*************************************99***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    
MTIIEEPEPN PTADHILDWL EESVSFLPSF LDDPYNANGI DDYQWWNQGQ DMAPEQLIGN  60
TGASSAAAPV NNTEATANVS TISVRPTDSV VPGPPAPADS SKKRRNTDDP PTRSSQSHHQ  120
RKNQGRRITE TEEGNEEGVI VKRSVGNKKN TNKSTGNNGN NGNSKEGRWA EQLLNPCAAA  180
ITAGNPTRVQ HLLYVLHELA SPTGDANHRL AAHGLRALTH HLSSLSSSST TTTSTGPLTF  240
SSTEPRFFQK SLLNFYDKSP WFAFPNNIAN SSILQILAQD RHNQVQNLHI LDIGVSHGVQ  300
WPTLLEALTR RSGGPPPLVR LTIIAPTAEN DQNAETPFSV GPPGDNYSLQ LLGFAKSMNI  360
NLQINRLESH PLQDLSAQMV STSPEETLIV CTQFRLHHLN HSTPDERTEF LRVLRRLEPK  420
GVILSENNMD CSCGNCGDFA TGFARRVEYL WRFLDSTSAA FKGRESEERR VMEGEAAKAL  480
TNRAEINEGK DKWCDRMRGV GFVGEVFGED AIDGGRALLR KYDNSWETRV EERDGCIELR  540
WKGQPVSFCS LWKLDVKVED S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-164GRAS family protein