PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38457.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 615aa MW: 68417.5 Da PI: 6.8115

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.2	6.3e-11	296	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +++Aa+a++ a++k++g GAY38457.1 296 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 352 78*****************433.44555535555.7799999***********98 PP
2	AP2	48	3.2e-15	395	446	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GAY38457.1 395 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 446 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MSNWLGFSLT PHLRIDHEGN FVNRDEQEQP QSCFSSTHHH HHHHHEPPLT AMPLRSDGSL 60 SLHVPQDWRY ENNGSGGASH EDRHQGPKLE DFLGSCCYSN SPSTDADDQN QHNGINVNIV 120 PSSCFNVDNN GDFDLETTTE NLTSHPSSII HRHYNQHHHH PQTQTLNPSY THNDDVMYHH 180 HFLHQHQHVP FESATSVAGF KSWLRQTPFA SSSSSAEKSA AASDTNQGNN CGFQPLSLAM 240 NPTSAEQNGP IIATAITPLQ VQGVAADNRK RPMGKATAAK EPVPRKSIDS FGQRTSQYRG 300 VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ GGYDKEDKAA RAYDLAALKY WGATTHINFP 360 LSTYEKELEE MKHMTRQEFV ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK 420 DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV TNFDISRYDV KRICSSSTLI ASDLAKRSQK 480 DSAPLVLEDY NSCASSTSPQ PLAISNGEAS DELVDMVWSA NSDDHQHQNT NTNNETSLGA 540 SGSRNSSNPE SPKCPVGLTS EFGMSGAEYN EGYFSSPGTK YENCDDDNGG NHSTNNRLVN 600 LGLVHHVPMF ALWNE

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MSNWLGFSLT PHLRIDHEGN FVNRDEQEQP QSCFSSTHHH HHHHHEPPLT AMPLRSDGSL  60
SLHVPQDWRY ENNGSGGASH EDRHQGPKLE DFLGSCCYSN SPSTDADDQN QHNGINVNIV  120
PSSCFNVDNN GDFDLETTTE NLTSHPSSII HRHYNQHHHH PQTQTLNPSY THNDDVMYHH  180
HFLHQHQHVP FESATSVAGF KSWLRQTPFA SSSSSAEKSA AASDTNQGNN CGFQPLSLAM  240
NPTSAEQNGP IIATAITPLQ VQGVAADNRK RPMGKATAAK EPVPRKSIDS FGQRTSQYRG  300
VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ GGYDKEDKAA RAYDLAALKY WGATTHINFP  360
LSTYEKELEE MKHMTRQEFV ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV TNFDISRYDV KRICSSSTLI ASDLAKRSQK  480
DSAPLVLEDY NSCASSTSPQ PLAISNGEAS DELVDMVWSA NSDDHQHQNT NTNNETSLGA  540
SGSRNSSNPE SPKCPVGLTS EFGMSGAEYN EGYFSSPGTK YENCDDDNGG NHSTNNRLVN  600
LGLVHHVPMF ALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-128	AP2 family protein