PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38519.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 394aa MW: 44059.4 Da PI: 6.5857

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.1e-19	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++v+ +G g+W++++++ g+ R++k+c++rw +yl GAY38519.1 30 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 77 788*******************************************97 PP
2	Myb_DNA-binding	48.2	2.5e-15	83	125	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ GAY38519.1 83 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 125 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
RETERQRDRK TETETEMGHH SCCNKQKVKR GLWSPEEDEK LINYVTTYGH GCWSSVPKHA 60 GLQRCGKSCR LRWINYLRPD LKRGSFSPQE AALIIELHSI LGNRWAQIAK HLPGRTDNEV 120 KNFWNSSIKK KLMSHEIVPA LASFPADFHN STCPEEVGFF SLNTNPNLIL NSHQQDHQFH 180 LPSPPPMFHN NFDQAEFKLN LSNYNVASIH FPPPPTIIPS SSTSSSSLDW SLPHHLQPQV 240 HLDPNPLENQ IFSHIEPVAP PHYYDDIIGD HDNKLNTTDP SIVTMPYDQN PFLVPTMPKL 300 CEILEGTVCN LPSSSASLEG VDPIAKLSCG TTFSSGSYPY HVPADPMEYT DAIMSILQPL 360 STSPSSSLSS LSPLSRGTYA TSTNPNFPST SWGP

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

RETERQRDRK TETETEMGHH SCCNKQKVKR GLWSPEEDEK LINYVTTYGH GCWSSVPKHA  60
GLQRCGKSCR LRWINYLRPD LKRGSFSPQE AALIIELHSI LGNRWAQIAK HLPGRTDNEV  120
KNFWNSSIKK KLMSHEIVPA LASFPADFHN STCPEEVGFF SLNTNPNLIL NSHQQDHQFH  180
LPSPPPMFHN NFDQAEFKLN LSNYNVASIH FPPPPTIIPS SSTSSSSLDW SLPHHLQPQV  240
HLDPNPLENQ IFSHIEPVAP PHYYDDIIGD HDNKLNTTDP SIVTMPYDQN PFLVPTMPKL  300
CEILEGTVCN LPSSSASLEG VDPIAKLSCG TTFSSGSYPY HVPADPMEYT DAIMSILQPL  360
STSPSSSLSS LSPLSRGTYA TSTNPNFPST SWGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	3e-85	MYB family protein