PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38746.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 338aa MW: 38181.8 Da PI: 4.4086

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k GAY38746.1 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 566899***********************************************9 PP
2	HD-ZIP_I/II	130.6	6e-42	59	151	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + ++L++++e+L +e++e GAY38746.1 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRE 151 69*************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MKRSLCSSDD SLGALMSICP ATDEQSPRNN QVYSREFQTM LDGLDEEGCL EESGGHVSEK 60 KRRLSVDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YGVLKANYDA LKLNYDSLQH DNEALLKEIR ELKSKLNEEN TESNISVKQE ETIVHETDHQ 180 NKATLDRDQE SDDKQAAAVA PPTNVTAISL AAAGNISDEP DQELNYDNGV LGISLFPDLK 240 DGSSDSDSSA ILNNEDNNNF HNSNNSHSPN AAISSSDGVI IQSQPHQLSI NCFEFSKPTY 300 QTQFVKMEEH NFFGDETCNF FSDEQPPSLP WYCSDQWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	89	KKRRLSVDQVKALEKNFEVENKLEPERKVK
2	108	116	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-65	HD-ZIP family protein