PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38890.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 323aa MW: 36589.8 Da PI: 7.2592

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	185	210	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ GAY38890.1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MAESGSGEAQ QAEQVCNFFR KPTKNKNIRK RTIREDEDED SIESSVLQNL KKPTKPDSKL 60 YFSTGPSKRD TSADSNADSE KPIFQFESSK EIQVQHDSKA TATLETETDF LRDSRALREK 120 VLKRSEEALK GKASGDEKLY KGIHGYVDHK AGFRREHTVS SEKAGGSHGP LRASAHIRVT 180 ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM EKEWEEAEKA RKRNLALGGG 240 DSDEEGVGQS DDDDEDSLPF ACFICRKPFV DPVVTKCKHY FCEHCALKHH SKNKKCFVCN 300 EPTLGIFNTA LEIRKRMAEE GKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-156	C3H family protein