PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38946.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

E2F/DP

Protein Properties

Length: 385aa MW: 43299.3 Da PI: 9.4387

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.9	3.4e-23	22	87	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ + + l+++a++L v +rRRiYDi+NVLe+++++++++kn+++wkg GAY38946.1 22 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKL---GV--ERRRIYDIVNVLESVGVLTRRAKNKYTWKG 87 79***************999********.....****************************98 PP
2	E2F_TDP	78.8	5e-25	157	237	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f++l+ +s+ +++tl+evak L+ + +++k+RR+YDi+NVL+++nliek ++k+++rw g GAY38946.1 157 RREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDahntsVMRTKVRRLYDIANVLSSMNLIEKthtadTRKPAFRWLG 237 689************************************999**********************99*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MPQSSSSTKV QDPSSRHYAY SRKQKSLGLL CSNFLSLYNR DGVESIGLDD AASKLGVERR 60 RIYDIVNVLE SVGVLTRRAK NKYTWKGFKA IPGALQELKE AGLRDAFTTL DGGNSAKGSD 120 DEDDDEDDDS SSNPNPGSQS DSLNPRSAHK SSKNDSRREK SLGLLTQNFV RLFVCSNVDM 180 ITLDEVAKLL LGDAHNTSVM RTKVRRLYDI ANVLSSMNLI EKTHTADTRK PAFRWLGVNR 240 LEIGLADSLN LDESRKRTFG TDVTNISFKR KRMDTSINGD ISQSIKMKKQ MKVDDFVRVV 300 DGSNSENYVN QGPRSYQFGP FAPESVPEVN TSKNNVKGAH DWESLTSKYR PQYHNQALRD 360 LFSHYMEAWQ SWYTEVAGKT IRQIS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MPQSSSSTKV QDPSSRHYAY SRKQKSLGLL CSNFLSLYNR DGVESIGLDD AASKLGVERR  60
RIYDIVNVLE SVGVLTRRAK NKYTWKGFKA IPGALQELKE AGLRDAFTTL DGGNSAKGSD  120
DEDDDEDDDS SSNPNPGSQS DSLNPRSAHK SSKNDSRREK SLGLLTQNFV RLFVCSNVDM  180
ITLDEVAKLL LGDAHNTSVM RTKVRRLYDI ANVLSSMNLI EKTHTADTRK PAFRWLGVNR  240
LEIGLADSLN LDESRKRTFG TDVTNISFKR KRMDTSINGD ISQSIKMKKQ MKVDDFVRVV  300
DGSNSENYVN QGPRSYQFGP FAPESVPEVN TSKNNVKGAH DWESLTSKYR PQYHNQALRD  360
LFSHYMEAWQ SWYTEVAGKT IRQIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	272	RKRTFGTDVTNISFKRKR
2	269	292	KRKRMDTSINGDISQSIKMKKQMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-132	E2F/DP family protein