PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38993.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 1976aa MW: 222933 Da PI: 5.6151

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.6	8.8e-38	1697	1798	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++rr+C+++C lapyfp +qpk f+n+hklFG+sn++k++k+l ++e++ +am+s++y+A++r r Pv+G+ g+i +l+ q+ q+++el++ GAY38993.1 1697 ACAVCKYQRRRCSAECLLAPYFPPDQPKMFQNAHKLFGVSNIVKIIKNLdSDEQKAEAMRSIIYQANIRDRFPVHGCWGIICQLRYQIWQAEEELHA 1793 7**********************************************566679**************************************** PP DUF260 97 lkeel 101 ++++l GAY38993.1 1794 VHAQL 1798 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 1976 aa Download sequence
MGHKKKNTAP RSKQSPAAAV EAEPCATPDA TSNQTNTEPW EADVVVGGGG ASTYGAIKLE 60 CERALTALRR GNHKKALRLM KELSSRHENS AYVALIHRVQ GTVCVKVASI IDDLNSKQRH 120 LKNAIESAKK AAELSPHSVE FAHFYANLLY EAANDGKEYE EVVQECERAL AIENPIDPAK 180 ESLQDESQQK ILTADARIAH VQSELRSLIQ KSNIASISTW MKNLGTGEEK FRLIPIRRVA 240 EDPMEVRLVQ ARRPNEIKKA TKTPEERRKE IEVRVAAARL LQQKSETGQL YQNNEGERNV 300 DSGSGGLEKR ERERRKHGSN LRRNRSKEER RDFVRSYWNS MSLEMKRELL KVKVCDIEAH 360 SASLKDGLAS DVLAEALAFA EENKTWRFWV CCRCNEKFAD SESHMHHVVQ QHMGNLLPKM 420 QAVLPQSVDN EWNEMIDNCS WKPLDIVAAV KMLGRDKTKS RDTEVSEDFY SGNHIEECDD 480 CFKDALDSSP EKENLGHSYN SSSVEGNDCE KVVSIQCREC DGNQVSAVYP LIDSWPVADD 540 TERVKLLERI HALFELLLRH KCLSASHLSK VIQYTMDELQ SLASGSLLLN HGVGQTPMCI 600 CFLGVHQLRK IVKFLQELSH ACSLGRYSER INSIDDANSV SPSLEIKETI VLNGDASCLL 660 LDERLLSTEL ISGDAFIDNV TSANIRHENG VAEDADALLT WIFAGPSSGE HLTTWMHSKE 720 EKTHQGMEIL QTLEKEFYHL QSLCERKCEH LSYEEALQAL EDLCLEEGKK RETVAEFGHR 780 SYESVLRKRR EELLESENDM FISSRFESDA ILNVLKEAEA LNVNQFGYED TYSGMTSQLC 840 DLESGEDDDW RNKDCLHQVD TCIEVAIQRQ KEQLSVELSK IDARIMRNVT SMQQLELKLE 900 PVSAYDYRSI LLPLVQSYLR AHLEDLAEKD ATEKSDAARE AFLAELALDS KKVARGGSDI 960 SKHTNDKTKE KRKHKEYRKT KDSKPVGGNE RHIVHDKTAD LVSFPVESDG DNPDSETVVS 1020 ANGDDLKLQE EEFRRKIELE AEERKLEETL AYQRRIENEA KLKHLAEQSK KSAQIFGENV 1080 AEGVCDTYLG HGSNDLDMHK SMRLSSPVQL VSKDEFPHNF EGTPVNTANG AAVPIRSSPT 1140 SSFQNINTAH HLSIKQGLPN GETPEDGFLP TDRRTGRRGR RHRSSNRSQD WKNQALSSEK 1200 ENIGVRSDDS HLTGAAAPYL GDGGTKTLRQ LHAEEDDEER FQADLKQAVR QSLDTFQAHQ 1260 KMPLVSSLRM TQNVSLEANK VAVLSNEVRS ENVNGIDVYG AGLKNEVGEY NCFLNVIIQS 1320 LWHLRRFREE FSRRSPSEHI HVGEPCVVCA LYEIFTALSI ASTDTRKEAV APTSLRIALS 1380 NLYPDSNFFQ EAQMNDASEV LAVIFDCLHR SFTPGSNVSD TESVESNCMG SWDCTNSACI 1440 VHSLFGMDIF ERMNCYSCGL ESRHLKYTSF FHNINASALR TMKVMCAESS LDELLNLVEM 1500 NHQLACDPGA GGCEKLNYIH HILSTPPHVF TTGDFRVMKT NHISIVVYKL ILMVVLRLAV 1560 LGWQNTCESF DDITATLAAL SPEIDISILY RGLDPKRRHS LVSVVCYYGQ HYHCFAYSHD 1620 QERWIMYDDK TVKVVGSWSD VLSMCERGHL QPQSDEDLAS IFQSCPGFFS GELLPHLYFG 1680 QLPFTENMTL KGGTSQACAV CKYQRRRCSA ECLLAPYFPP DQPKMFQNAH KLFGVSNIVK 1740 IIKNLDSDEQ KAEAMRSIIY QANIRDRFPV HGCWGIICQL RYQIWQAEEE LHAVHAQLEM 1800 YRQHYQQQVS TMTDDVPSQL ELGIGMAPPN ALSLFNHNPQ QQQQPYNAAA LPLSQQHSYS 1860 NNSYNSPYMD VKDSSVSNSL WIQHPYAINN NANSLAIQSQ LIASQPLTIQ QEVVQDYDEM 1920 HPFFDTIDDR QSYIDSKEAY ESSSEESLKD TTQSIEHVAE NELKSAAACF SLTSVN

Sequence ? help Back to Top

Protein Sequence Length: 1976 aa Download sequence

MGHKKKNTAP RSKQSPAAAV EAEPCATPDA TSNQTNTEPW EADVVVGGGG ASTYGAIKLE  60
CERALTALRR GNHKKALRLM KELSSRHENS AYVALIHRVQ GTVCVKVASI IDDLNSKQRH  120
LKNAIESAKK AAELSPHSVE FAHFYANLLY EAANDGKEYE EVVQECERAL AIENPIDPAK  180
ESLQDESQQK ILTADARIAH VQSELRSLIQ KSNIASISTW MKNLGTGEEK FRLIPIRRVA  240
EDPMEVRLVQ ARRPNEIKKA TKTPEERRKE IEVRVAAARL LQQKSETGQL YQNNEGERNV  300
DSGSGGLEKR ERERRKHGSN LRRNRSKEER RDFVRSYWNS MSLEMKRELL KVKVCDIEAH  360
SASLKDGLAS DVLAEALAFA EENKTWRFWV CCRCNEKFAD SESHMHHVVQ QHMGNLLPKM  420
QAVLPQSVDN EWNEMIDNCS WKPLDIVAAV KMLGRDKTKS RDTEVSEDFY SGNHIEECDD  480
CFKDALDSSP EKENLGHSYN SSSVEGNDCE KVVSIQCREC DGNQVSAVYP LIDSWPVADD  540
TERVKLLERI HALFELLLRH KCLSASHLSK VIQYTMDELQ SLASGSLLLN HGVGQTPMCI  600
CFLGVHQLRK IVKFLQELSH ACSLGRYSER INSIDDANSV SPSLEIKETI VLNGDASCLL  660
LDERLLSTEL ISGDAFIDNV TSANIRHENG VAEDADALLT WIFAGPSSGE HLTTWMHSKE  720
EKTHQGMEIL QTLEKEFYHL QSLCERKCEH LSYEEALQAL EDLCLEEGKK RETVAEFGHR  780
SYESVLRKRR EELLESENDM FISSRFESDA ILNVLKEAEA LNVNQFGYED TYSGMTSQLC  840
DLESGEDDDW RNKDCLHQVD TCIEVAIQRQ KEQLSVELSK IDARIMRNVT SMQQLELKLE  900
PVSAYDYRSI LLPLVQSYLR AHLEDLAEKD ATEKSDAARE AFLAELALDS KKVARGGSDI  960
SKHTNDKTKE KRKHKEYRKT KDSKPVGGNE RHIVHDKTAD LVSFPVESDG DNPDSETVVS  1020
ANGDDLKLQE EEFRRKIELE AEERKLEETL AYQRRIENEA KLKHLAEQSK KSAQIFGENV  1080
AEGVCDTYLG HGSNDLDMHK SMRLSSPVQL VSKDEFPHNF EGTPVNTANG AAVPIRSSPT  1140
SSFQNINTAH HLSIKQGLPN GETPEDGFLP TDRRTGRRGR RHRSSNRSQD WKNQALSSEK  1200
ENIGVRSDDS HLTGAAAPYL GDGGTKTLRQ LHAEEDDEER FQADLKQAVR QSLDTFQAHQ  1260
KMPLVSSLRM TQNVSLEANK VAVLSNEVRS ENVNGIDVYG AGLKNEVGEY NCFLNVIIQS  1320
LWHLRRFREE FSRRSPSEHI HVGEPCVVCA LYEIFTALSI ASTDTRKEAV APTSLRIALS  1380
NLYPDSNFFQ EAQMNDASEV LAVIFDCLHR SFTPGSNVSD TESVESNCMG SWDCTNSACI  1440
VHSLFGMDIF ERMNCYSCGL ESRHLKYTSF FHNINASALR TMKVMCAESS LDELLNLVEM  1500
NHQLACDPGA GGCEKLNYIH HILSTPPHVF TTGDFRVMKT NHISIVVYKL ILMVVLRLAV  1560
LGWQNTCESF DDITATLAAL SPEIDISILY RGLDPKRRHS LVSVVCYYGQ HYHCFAYSHD  1620
QERWIMYDDK TVKVVGSWSD VLSMCERGHL QPQSDEDLAS IFQSCPGFFS GELLPHLYFG  1680
QLPFTENMTL KGGTSQACAV CKYQRRRCSA ECLLAPYFPP DQPKMFQNAH KLFGVSNIVK  1740
IIKNLDSDEQ KAEAMRSIIY QANIRDRFPV HGCWGIICQL RYQIWQAEEE LHAVHAQLEM  1800
YRQHYQQQVS TMTDDVPSQL ELGIGMAPPN ALSLFNHNPQ QQQQPYNAAA LPLSQQHSYS  1860
NNSYNSPYMD VKDSSVSNSL WIQHPYAINN NANSLAIQSQ LIASQPLTIQ QEVVQDYDEM  1920
HPFFDTIDDR QSYIDSKEAY ESSSEESLKD TTQSIEHVAE NELKSAAACF SLTSVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	769	790	KKRETVAEFGHRSYESVLRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-49	LBD family protein