PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY39553.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 293aa    MW: 31564 Da    PI: 4.8677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY39553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16110156455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  GAY39553.1 110 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 156
                 6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MADLYGTTPP TAGHEPEEIS SFLNQFIHNS SSSSSSCFFA QPEDRHPFGR SADPSVLDSS  60
SAGLNFSNLV VGAVDSDTND SEKGPDALEV PSNDTVRTKT SSKRSRAAEV HNLSEKRRRS  120
RINEKLKALQ NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ MLTMRNGLSL HPMWLPGVLP  180
SMQLPQMGMV FDEGNGLLNT DGGTETFSAN EESSVQTGFN LSSQCTISNQ PVALPSAANI  240
STSETAFGLE PLIQAHYGPF TLPSSSKEIC SEGAPHLHLD MNFNGKNSSS GVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-46bHLH family protein