PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39563.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 417aa MW: 47943.3 Da PI: 8.1156

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	157	180	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H GAY39563.1 157 YICGVCGRKCKTNLDLKKHFKQlH 180 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MKWLCSSLDA RSLKPLVRYN KSDFHFSQSL VLEKLPTHFN TKLALKPSKC CIKASSASAS 60 IDIDMVRNKQ GIYTQKQNNK VVVLWDLDNK PPRGPPYDAA MSLRRVAERF GEVTDISAYA 120 NRHAFIHLPQ WVIQERRERK QFDILERRGV AVPNDPYICG VCGRKCKTNL DLKKHFKQLH 180 ERERQKKLNR MKSLKGKKRQ KYKERYISGN DKYNEAARSL LKPKVGYGLG SELRRAGVFV 240 KTVRDKPQAA DWALKRQMQH SMSSGVDWMF LVSDDNDFKE MLRKARDANL GTVVVGDSNR 300 GLGQHADLWV PWIEVENGEL TERDLVPRTR RTTTEDFERD GLGLFSLTEF DGVVGFEDET 360 DLDSVVNELV AERTEFGGVR ISMFSEGEEE EDYWVTEEAG GDYLLEGGEL EEQDSYF

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MKWLCSSLDA RSLKPLVRYN KSDFHFSQSL VLEKLPTHFN TKLALKPSKC CIKASSASAS  60
IDIDMVRNKQ GIYTQKQNNK VVVLWDLDNK PPRGPPYDAA MSLRRVAERF GEVTDISAYA  120
NRHAFIHLPQ WVIQERRERK QFDILERRGV AVPNDPYICG VCGRKCKTNL DLKKHFKQLH  180
ERERQKKLNR MKSLKGKKRQ KYKERYISGN DKYNEAARSL LKPKVGYGLG SELRRAGVFV  240
KTVRDKPQAA DWALKRQMQH SMSSGVDWMF LVSDDNDFKE MLRKARDANL GTVVVGDSNR  300
GLGQHADLWV PWIEVENGEL TERDLVPRTR RTTTEDFERD GLGLFSLTEF DGVVGFEDET  360
DLDSVVNELV AERTEFGGVR ISMFSEGEEE EDYWVTEEAG GDYLLEGGEL EEQDSYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	177	RRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-160	C2H2 family protein