PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39583.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 302aa MW: 32975 Da PI: 8.2884

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.4	7.8e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + GAY39583.1 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	55.6	1.3e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ GAY39583.1 66 PFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MASTKKDVDR IKGPWSPEED EALQRLVQNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRPFTPE EDETILRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKCSSMSDES 120 QVDAINPLPL KRANSVGPSN NISGLCLNPG SPSGSDLSDS SLPGVAQSPV CHPLFRTGSL 180 VPVETSSSTT DPPTSLSLSL PGSESCEVSN HGPGSENGSN LVLNPNQVAS TQPLQVQAQA 240 QNQGEFGYEK QFFNPEFLAV MQEMIRKEVR NYMSGVERNG LCLPAEAIRN AVVKRIGINK 300 AD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	6e-75	MYB family protein