PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY39996.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 250aa    MW: 27442.8 Da    PI: 6.7863
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY39996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39401411101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael +++
  GAY39996.1  40 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQ 138
                 7***********************9989**********************************************************************9 PP

      DUF260  99 eel 101
                 ++l
  GAY39996.1 139 NQL 141
                 985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MAEQQPDPIS EPRRRGAGKR ATTAPSPEAE PMSAPAPAAP CGACKFLRRK CVSGCIFAPH  60
FGSDQGAARF AAVHKVFGAS NVSKLLLHIP VNRRQDAVVT ISYEAQARLS DPVYGCVSTI  120
LALQQQVASL QAELTMVQNQ LLNSRFVMAN ALQTSQQPQQ PQHVALLHQQ QQQPAYSNSS  180
SASTNFINMS NLASNFDFAA ETVLSCHSME PLHELSRPAH DDEDDEEESQ IPIMFTNDHH  240
QILHNHRRTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-63LBD family protein