PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40427.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-X1

Protein Properties

Length: 849aa MW: 95264.9 Da PI: 8.3928

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17	1.3e-05	185	203	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCppCp+ GAY40427.1 185 CG-HFCLLLCHPGPCPPCPK 203 .*************96 PP
2	zf-NF-X1	17.6	8.4e-06	240	256	4	20
zf-NF-X1 4 HkCqklCHeGpCppCpq 20 HkC ++CHeGpCppC++ GAY40427.1 240 HKCLQICHEGPCPPCKA 256 ***************95 PP
3	zf-NF-X1	16.5	1.8e-05	397	416	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ GAY40427.1 397 CGRHACKRRCCNGDCPPCSE 416 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence
MTSSANYQQI LSDSDTDSDN GRTESFPDLS SSILKPYLES TNQSSLATSQ SPSELSKIKS 60 FLASSSSGAL SCLICLERIK PSDPTWHCST LCYSIFHLIC IQSWARQSSD LSASLAASRL 120 PITAEKAAES STWNCPKCRS QYSKSQIPKK YLCFCGKLED PYSEDPWILP HSCNEICNRP 180 LQNNCGHFCL LLCHPGPCPP CPKLVNSSCF CRKFQEVRRC GFKSFSCNKI CSKPLDCRTH 240 KCLQICHEGP CPPCKARAVY MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH 300 VGQCGGCPLP GKRTCPCGKR VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIG 360 TCRMVIAKLC RCRSLKKEVP CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSERCLC 420 PLPSDGDYFM CMWGNTVPCG TEKDQKPPKC RKSCHVIPLC RHRSICKPHK CHYGACPPCR 480 LLCEEEYPCG HSCKLSCHGP RPPPNPEFTL KTKKKKSNHQ SEVTPGSPCP PCPELIWRSC 540 VGEHIGAERM MVCSDRTQFS CDNLCGNPLP CGNHYCTKYC HALKSQSSLS VETRSAESCE 600 VCSLPCQKER LPTCPHSCPL PCHPGVCPSC KVLVKRSCHC GSMVHVFECI YFNTLSEKEQ 660 MAARSCGGPC HRKLPYCTHL CPEICHPGQC PLPEQCCKKV TVRCGCQTLK KEWQCLDVQA 720 AYRNIGRDPK DISKNQFGLG LLRCNCDCKS KVQVVDSVLQ SRKPKVEEKE PATEKHVGKR 780 RKRRECVRVV NQASRLQRIF TAVKWLLLFV TLLVAVAAGL YYGYKGLLKL SDWMNEVEEQ 840 RQRKRFPRI

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence

MTSSANYQQI LSDSDTDSDN GRTESFPDLS SSILKPYLES TNQSSLATSQ SPSELSKIKS  60
FLASSSSGAL SCLICLERIK PSDPTWHCST LCYSIFHLIC IQSWARQSSD LSASLAASRL  120
PITAEKAAES STWNCPKCRS QYSKSQIPKK YLCFCGKLED PYSEDPWILP HSCNEICNRP  180
LQNNCGHFCL LLCHPGPCPP CPKLVNSSCF CRKFQEVRRC GFKSFSCNKI CSKPLDCRTH  240
KCLQICHEGP CPPCKARAVY MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH  300
VGQCGGCPLP GKRTCPCGKR VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIG  360
TCRMVIAKLC RCRSLKKEVP CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSERCLC  420
PLPSDGDYFM CMWGNTVPCG TEKDQKPPKC RKSCHVIPLC RHRSICKPHK CHYGACPPCR  480
LLCEEEYPCG HSCKLSCHGP RPPPNPEFTL KTKKKKSNHQ SEVTPGSPCP PCPELIWRSC  540
VGEHIGAERM MVCSDRTQFS CDNLCGNPLP CGNHYCTKYC HALKSQSSLS VETRSAESCE  600
VCSLPCQKER LPTCPHSCPL PCHPGVCPSC KVLVKRSCHC GSMVHVFECI YFNTLSEKEQ  660
MAARSCGGPC HRKLPYCTHL CPEICHPGQC PLPEQCCKKV TVRCGCQTLK KEWQCLDVQA  720
AYRNIGRDPK DISKNQFGLG LLRCNCDCKS KVQVVDSVLQ SRKPKVEEKE PATEKHVGKR  780
RKRRECVRVV NQASRLQRIF TAVKWLLLFV TLLVAVAAGL YYGYKGLLKL SDWMNEVEEQ  840
RQRKRFPRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein