PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY40463.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 180aa    MW: 20043.1 Da    PI: 8.3117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY40463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.6e-40201191100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+l+rkC + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++la++++
  GAY40463.1  20 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARA 118
                 6**********************************************************************************************9987 PP

      DUF260 100 e 100
                 +
  GAY40463.1 119 R 119
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MKKWMCYKAM RGHEPRSSSS CAACKLLKRK CIPTCIFAPY FRSDEPKKFA KVHKVFGASN  60
VSKILTEVPE EQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMIELQ QDLAVARARL  120
ARYTTPAASS CAVLNDLCVG GSPAFSDLAA CGDFFDSFSQ NSLELNRVGD MYDFSQVPYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-69LBD family protein