PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY40489.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 154aa    MW: 17272.8 Da    PI: 6.495
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY40489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.2e-296931100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk            +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++
  GAY40489.1   6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHK------------ELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEA 92 
                 7********************************97............99**********************************************9987 PP

      DUF260 100 e 100
                 e
  GAY40489.1  93 E 93 
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MGGNSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK ELPVHQRADA VSSLVYEANA  60
RVRDPVYGCV GAISFLQNQV SQLQMQLAVA EAEILCIQMQ QEPMMPTPQI DPDDKSFLLQ  120
NNLPHQYLNF TSSSNNVIHD SLKRESIFGH DMVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-61LBD family protein