PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY40875.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 477aa MW: 51028.5 Da PI: 8.9385

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY40875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f++rtG C yGdrC+++H++ GAY40875.1 52 VPDCVFYMRTGVCGYGDRCRYNHPR 76 689********************96 PP
2	zf-CCCH	42	1.5e-13	95	121	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tGtCk+G++CkF+H++ GAY40875.1 95 PGEPICQFYLKTGTCKFGASCKFHHPK 121 5799*********************96 PP
3	zf-CCCH	36.6	7.5e-12	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ GAY40875.1 142 GEKECSYYLKTGQCKFGITCKFHHPQ 167 7899********************97 PP
4	zf-CCCH	38.6	1.8e-12	298	324	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+G++C+F+H++ GAY40875.1 298 PGEPECQYFLKTGDCKFGSSCRFHHPR 324 5799*********************96 PP
5	zf-CCCH	34.2	4.3e-11	347	370	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C f++++G Ck+G++CkF H++ GAY40875.1 347 QPCTFYLQNGRCKFGATCKFDHPM 370 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MELYGRNNTS RNGSQSGHQP QWSPTDQATG LEESMWQSDL KVNESYPQRH GVPDCVFYMR 60 TGVCGYGDRC RYNHPRNRAA VEAAVRATGD YPDRPGEPIC QFYLKTGTCK FGASCKFHHP 120 KHSGGSMSHV PLNIYGYPLR PGEKECSYYL KTGQCKFGIT CKFHHPQPAG TSLPASAPQF 180 YPPVQSPTVP MAEQYGGAST SLRVARPPLL ASSYVQGAYG PVLFSPGVVP FSGWNPYSAS 240 VSPVLSPGAQ PAVGATSLYG VTQISSSMPA LAGLYPSLPS SAGPSSSGQM EQSFPERPGE 300 PECQYFLKTG DCKFGSSCRF HHPRDRVVPR TNCALSPLGL PLRPGAQPCT FYLQNGRCKF 360 GATCKFDHPM GAMRYSPSAS SLIETPVAPY PVGSLLSTLA PASSSSDLRP ELISGSKKDS 420 LLSRIPSSGN TSSSSVGLIF SQTGSVPLSD LQLSGQSSVP LSSSRSARQG VEVRRLS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MELYGRNNTS RNGSQSGHQP QWSPTDQATG LEESMWQSDL KVNESYPQRH GVPDCVFYMR  60
TGVCGYGDRC RYNHPRNRAA VEAAVRATGD YPDRPGEPIC QFYLKTGTCK FGASCKFHHP  120
KHSGGSMSHV PLNIYGYPLR PGEKECSYYL KTGQCKFGIT CKFHHPQPAG TSLPASAPQF  180
YPPVQSPTVP MAEQYGGAST SLRVARPPLL ASSYVQGAYG PVLFSPGVVP FSGWNPYSAS  240
VSPVLSPGAQ PAVGATSLYG VTQISSSMPA LAGLYPSLPS SAGPSSSGQM EQSFPERPGE  300
PECQYFLKTG DCKFGSSCRF HHPRDRVVPR TNCALSPLGL PLRPGAQPCT FYLQNGRCKF  360
GATCKFDHPM GAMRYSPSAS SLIETPVAPY PVGSLLSTLA PASSSSDLRP ELISGSKKDS  420
LLSRIPSSGN TSSSSVGLIF SQTGSVPLSD LQLSGQSSVP LSSSRSARQG VEVRRLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein