PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41047.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 432aa MW: 48245.7 Da PI: 4.4273

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l ++++ G g+W++ ++ g+ R++k+c++rw +yl GAY41047.1 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.5	6.3e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e+++++++ lG++ W++Ia+ m+ gRt++++k++w+++l GAY41047.1 67 RGNITAEEEEIIIKLHASLGNR-WSLIASNMP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MGRAPCCEKV GLKKGRWTAE EDDILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TAEEEEIIIK LHASLGNRWS LIASNMPGRT DNEIKNYWNS HLSRKIHTFW 120 RPSSEKTLPV KVDAAAAGTG VASDRKAGKK IGSAIMKNKS HSKKDGNINI GTEEIVAKDG 180 NINIGTEEIV ASIEEDIPLP ATPIVASIEE DIPLPATPTL EKETLPSTAL VGCMDLDSFA 240 EDKETTDKIV RSPCRQEDNG LDSSEVREKS VLCSGEETRI NNKSMLCRTG EEKETEILEP 300 FEGIDDAKLC FNDLLDPNEV WTLMEEKDTR VTNTFEGRQI GNNVPTSEEL VSANGDSVSL 360 RSCSSVNSFF DDSNFDWDWE NVIQDYDPQR DENENVLSWL WESGDKDEPK SHEGEDETDC 420 EKQNAMVAWL LS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MGRAPCCEKV GLKKGRWTAE EDDILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TAEEEEIIIK LHASLGNRWS LIASNMPGRT DNEIKNYWNS HLSRKIHTFW  120
RPSSEKTLPV KVDAAAAGTG VASDRKAGKK IGSAIMKNKS HSKKDGNINI GTEEIVAKDG  180
NINIGTEEIV ASIEEDIPLP ATPIVASIEE DIPLPATPTL EKETLPSTAL VGCMDLDSFA  240
EDKETTDKIV RSPCRQEDNG LDSSEVREKS VLCSGEETRI NNKSMLCRTG EEKETEILEP  300
FEGIDDAKLC FNDLLDPNEV WTLMEEKDTR VTNTFEGRQI GNNVPTSEEL VSANGDSVSL  360
RSCSSVNSFF DDSNFDWDWE NVIQDYDPQR DENENVLSWL WESGDKDEPK SHEGEDETDC  420
EKQNAMVAWL LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-74	MYB family protein