PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY41186.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 305aa    MW: 34342.9 Da    PI: 8.2384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY41186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++v q+G ++W++++   g+ R +k+c++rw +yl
       GAY41186.1 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66
                     678*******************************************97 PP
2Myb_DNA-binding47.54.2e-1572117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +  +E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w+++l
       GAY41186.1  72 RGVFNMQEEETILTLHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL 117
                      7888999***************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MGCKSSEKPI AKPKPKHRKG LWSPEEDQRL KNYVLQHGHP CWSSVPINAG LQRNGKSCRL  60
RWINYLRPGL KRGVFNMQEE ETILTLHRLL GNKWSQIAQH LPGRTDNEIK NYWHSHLKKK  120
LAKLEEMEAA NATTPSSENM ESSTSPNNNP STRSSSYESL HHMEKSSAGS TDQCATQGQK  180
SCLPKLLFAE WLSLDHANVG SFANSFEQVA SKEGFNNNNN NNNNNNNNQN SNLVQDSSDT  240
FMNGYLSNEG AFGGDFIHNG FNNSFVDEML SSRFKFEDHQ FSGIGFVDSI SGDDAKRPTY  300
DKKNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-56MYB family protein