PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41233.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 123aa MW: 13769.8 Da PI: 7.7578

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124	7.6e-39	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrr+C++dC++apyfpa++p++fa+vhk++G s+v ++l++lp e r +a+++++ eAe+r++dPvyG+v++i+ lqqq+++++++l+++++ GAY41233.1 6 RCAACRHLRRRCPSDCIFAPYFPANDPHRFACVHKIYGSSKVGNMLQDLPVELRAEAADAICIEAECRVQDPVYGCVRMISLLQQQIHNAESQLVKARA 104 6**********************************************************************************************9998 PP DUF260 100 e 100 e GAY41233.1 105 E 105 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence
MSTSSRCAAC RHLRRRCPSD CIFAPYFPAN DPHRFACVHK IYGSSKVGNM LQDLPVELRA 60 EAADAICIEA ECRVQDPVYG CVRMISLLQQ QIHNAESQLV KARAEIAVLG SHAQELRHHV 120 QDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-32	LBD family protein