PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41235.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARR-B

Protein Properties

Length: 614aa MW: 67237.7 Da PI: 7.0063

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	75.5	7.3e-24	173	226	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt+ LH+rF++a++++ ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ GAY41235.1 173 KAKVVWTNSLHNRFLQAIRHI-TLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 226 6799***************.9*****************************6 PP
2	Myb_DNA-binding	28.2	4.4e-09	176	225	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT ++ ++++a++ + +k+I + m+ g+t++++ s++qky+ GAY41235.1 176 VVWTNSLHNRFLQAIRHITLEkaVPKKILEFMNvPGLTRENVASHLQKYR 225 68************9999999************************7 PP
3	Response_reg	78.7	2e-26	16	124	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 vl+vdD+ + + ++ +l++ +y +v +++ + +al++++ ++ +Dl+++D+ mp+m+Glel kei+ee +lp++v+++ + e+ + + l Ga GAY41235.1 16 VLVVDDDSTSLAIVSAVLKHWDY-DVVTVKRPVDALAMIRIHQdIDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVF 111 89*******************.***********87777************************************************* PP EEESS--HHHHHH CS Response_reg 97 flsKpfdpeelvk 109 + +Kp++p++l++ GAY41235.1 112 YMVKPVNPDALRN 124 ********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MSETFMAKPS FLRFNVLVVD DDSTSLAIVS AVLKHWDYDV VTVKRPVDAL AMIRIHQDID 60 LVITDLHMPE MNGLELQKEI NEEFIHLPVM VMSSDDRESV IMKSLASGAV FYMVKPVNPD 120 ALRNVWQYAV TSKKGKSIFI EEKKKESKTN SKRKASKRRK DELEGENAAA PKKAKVVWTN 180 SLHNRFLQAI RHITLEKAVP KKILEFMNVP GLTRENVASH LQKYRIFLKR VAENGINAAL 240 KNFNHRSSLA SGRTSMMLQE VQDYAQAIEK QLQMRTSPFI PRYGRGISEL NGNTSFGSIG 300 LQSHNSLSHM GLLGVQDNFH QPFFGNTTYP LYQANPGTTF GTGLIDMGTN SFSCGGLSGG 360 LMNGTNSNQI FHQKSKLRPD PYDNNTGASS LKGFGASGLE KMWTINNNPY LNYAGIRLKN 420 DGDQLVGAGE VGLNVKGDAG AGNEGPTFHH LPLGYSSSPA GFAVGNEQEH TSVLPPLSLS 480 QQQYGLGKKV ENDFTFGLMN TVNASVNDDT AQPGRLGEGA DFGDLLFDLS DFQFLFQQQG 540 DGEGALNPNI GSGSGSHQPE LNRPINQSQN PVLPSAFADN ASGPWNEPTL EQIINAKILC 600 SDSGHSRSNE PGFG

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MSETFMAKPS FLRFNVLVVD DDSTSLAIVS AVLKHWDYDV VTVKRPVDAL AMIRIHQDID  60
LVITDLHMPE MNGLELQKEI NEEFIHLPVM VMSSDDRESV IMKSLASGAV FYMVKPVNPD  120
ALRNVWQYAV TSKKGKSIFI EEKKKESKTN SKRKASKRRK DELEGENAAA PKKAKVVWTN  180
SLHNRFLQAI RHITLEKAVP KKILEFMNVP GLTRENVASH LQKYRIFLKR VAENGINAAL  240
KNFNHRSSLA SGRTSMMLQE VQDYAQAIEK QLQMRTSPFI PRYGRGISEL NGNTSFGSIG  300
LQSHNSLSHM GLLGVQDNFH QPFFGNTTYP LYQANPGTTF GTGLIDMGTN SFSCGGLSGG  360
LMNGTNSNQI FHQKSKLRPD PYDNNTGASS LKGFGASGLE KMWTINNNPY LNYAGIRLKN  420
DGDQLVGAGE VGLNVKGDAG AGNEGPTFHH LPLGYSSSPA GFAVGNEQEH TSVLPPLSLS  480
QQQYGLGKKV ENDFTFGLMN TVNASVNDDT AQPGRLGEGA DFGDLLFDLS DFQFLFQQQG  540
DGEGALNPNI GSGSGSHQPE LNRPINQSQN PVLPSAFADN ASGPWNEPTL EQIINAKILC  600
SDSGHSRSNE PGFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	160	KKKESKTNSKRKASKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-50	ARR-B family protein