PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY41279.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24922.4 Da    PI: 8.4611
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY41279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.72e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien++ rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  GAY41279.1  9 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
                68***********************************************96 PP
2K-box67.54.5e-23841681195
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                 e+ +++l++e+a++ ++ie ++ +qR+llG+dL+s++ +eLq+L +qLe+sl++iR++K++l+ eq+ +l++ke+ l e+n +L 
  GAY41279.1  84 ERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSCTNEELQELDDQLERSLRSIRARKTQLFNEQMGQLKEKERLLLEDNARLC 168
                 667899***************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MVRGKIQMKK IENDTSRQVT FSKRRNGMLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSSS  60
EMQKTLERYY RYTEERQIDR NGMERYMQQL KHEIANMIEK IEHIEVSQRK LLGQDLGSCT  120
NEELQELDDQ LERSLRSIRA RKTQLFNEQM GQLKEKERLL LEDNARLCIK CGQKPWQQST  180
QRKEAVNNCS QSGQSSDIET ELFIGLPEMR AA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-72MIKC_MADS family protein