PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY41287.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26100.9 Da    PI: 9.6144
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY41287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.6e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ri+nk+nrq tf+kRr g+lKKA+ELS LCdaeva+iifss+gkl+e+ 
  GAY41287.1  9 ERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGKLFEFG 58
                69**********************************************95 PP
2K-box72.71e-24811747100
       K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + ++ + e l +e+ +L++  e+L+r+qRh+lGedL++L +keLq+Le+qL+k l+  R++ ++l+++++e+lqkk ++l+eenk+L+ klee
  GAY41287.1  81 IDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRNTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174
                 4566667788999****************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRGKMVLER IQNKINRQAT FAKRRDGLLK KAYELSLLCD AEVALIIFSS HGKLFEFGSN  60
FGMAKILERY RQYCYTSQEP IDINQLEPEA LFREILRLRA LRESLERSQR HFLGEDLGTL  120
GVKELQKLEK QLDKTLSLSR QRNTDLMRQH LETLQKKAHD LEEENKQLKF KLEEAIRASG  180
ADPNIAVITN HLRVHPAQQM GYNAHDRANI GAASDFVSGA ISPAQGWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-46MIKC_MADS family protein